RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TUBA1AQ71U36 451 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 MICU2Q8IYU8 434 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 GPRC5AQ8NFJ5 357 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 TSPAN14Q8NG11 270 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 NCLNQ969V3 563 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 NXNL1Q96CM4 212 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 OCEL1Q9H607 264 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 ARHGEF4Q9NR80 690 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 KIAA1257Q9ULG3 409 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 CCL15-CCL14A0A0B4J2E2 113 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 A0A0J9YVX5 310 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 J3QRK9 145 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 MRASO14807 208 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 BIRC5O15392 142 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 SLC18A1P54219 525 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PRKAA1Q13131 559 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 CCL15Q16663 113 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 CTC1Q2NKJ3 1217 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 SGO1Q5FBB7 561 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 CELF3Q5SZQ8 465 aaKnown RBP12.06□□□□□ -0.48
HMGB1-206ENST00000405805 TMTC4Q5T4D3 741 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 BTBD8Q5XKL5 378 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PLD3Q8IV08 490 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PARP8Q8N3A8 854 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 HTRA1Q92743 480 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 FBXL8Q96CD0 374 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 ZNF560Q96MR9 790 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PCYT2Q99447 389 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 GPR20Q99678 358 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 TKTL2Q9H0I9 626 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 FAM8A1Q9UBU6 413 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 SUN2Q9UH99 717 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 A0A088AWK7 358 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 B3GAT3O94766 335 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PRLP01236 227 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 LGALS2P05162 132 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 TBCELQ5QJ74 424 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 SLC9A4Q6AI14 798 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 SULT1C3Q6IMI6 304 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 CCDC81Q6ZN84 652 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 ILDR2Q71H61 639 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 MIB1Q86YT6 1006 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 IQCF2Q8IXL9 164 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 CLEC4FQ8N1N0 589 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 BHMTQ93088 406 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 RMND5BQ96G75 393 aaPredicted RBP12.06□□□□□ -0.48
HMGB1-206ENST00000405805 R3HDMLQ9H3Y0 253 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 ITGA11Q9UKX5 1188 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 SCN9AQ15858 1988 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 ZSCAN5BA6NJL1 495 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 FBP2O00757 339 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 GSTA4O15217 222 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 OXSR1O95747 527 aaPredicted RBP12.06□□□□□ -0.48
HMGB1-206ENST00000405805 ZNF23P17027 643 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 OXCT1P55809 520 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PSME3P61289 254 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 STX5Q13190 355 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 SNAPC2Q13487 334 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PDCD4Q53EL6 469 aaKnown RBP12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PRAMEF19Q5SWL8 479 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 CLEC6AQ6EIG7 209 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PSTKQ8IV42 348 aaKnown RBP12.06□□□□□ -0.48
HMGB1-206ENST00000405805 NIPA2Q8N8Q9 360 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 DDX43Q9NXZ2 648 aaKnown RBP12.06□□□□□ -0.48
HMGB1-206ENST00000405805 PTTG2Q9NZH5 202 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 ADAMTSL1Q8N6G6 1762 aa12.06□□□□□ -0.48
HMGB1-206ENST00000405805 FAM95CA0A1B0GW59 222 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 H0Y626 953 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 TRAFD1O14545 582 aaPredicted RBP12.05□□□□□ -0.48
HMGB1-206ENST00000405805 NMBRP28336 390 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 NR2C2P49116 596 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 SYPL2Q5VXT5 272 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 METTL21CQ5VZV1 264 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 TTC39CQ8N584 583 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 OR52K2Q8NGK3 314 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 RMDN1Q96DB5 314 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 ALG9Q9H6U8 611 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 TXNRD2Q9NNW7 524 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 OR12D3Q9UGF7 316 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 IPO11Q9UI26 975 aaKnown RBP12.05□□□□□ -0.48
HMGB1-206ENST00000405805 BCLAF3A2AJT9 711 aaKnown RBP12.05□□□□□ -0.48
HMGB1-206ENST00000405805 ENDOD1O94919 500 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 L1CAMP32004 1257 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 GRIK1P39086 918 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 ACADSBP45954 432 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 SERPINB10P48595 397 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 ARHGAP17Q68EM7 881 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 FAM47BQ8NA70 645 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 ZFP42Q96MM3 310 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 TRIM8Q9BZR9 551 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 SP110Q9HB58 689 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 SPON1Q9HCB6 807 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 WDR6Q9NNW5 1121 aaKnown RBP12.05□□□□□ -0.48
HMGB1-206ENST00000405805 NT5MQ9NPB1 228 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 ABCB10Q9NRK6 738 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 SIRPGQ9P1W8 387 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 STK39Q9UEW8 545 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 PSMD13Q9UNM6 376 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 HEATR9A2RTY3 570 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 TSTA3Q13630 321 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms