RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 UGT3A1Q6NUS8 523 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 SNX19Q92543 992 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 HIST1H2AHQ96KK5 128 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 HIST1H2AJQ99878 128 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 H2AFJQ9BTM1 129 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 PADI3Q9ULW8 664 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 DLEC1Q9Y238 1755 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 CDH13P55290 713 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 DENND6AQ8IWF6 608 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 DDI1Q8WTU0 396 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 WDR60Q8WVS4 1066 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 DLG3Q92796 817 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 WWOXQ9NZC7 414 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 VPS28Q9UK41 221 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 PRPF19Q9UMS4 504 aaKnown RBP18.72■□□□□ 0.59
USP48-204ENST00000400301 VWA7Q9Y334 891 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 PSAT1Q9Y617 370 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 KPNA1P52294 538 aaPredicted RBP18.72■□□□□ 0.59
USP48-204ENST00000400301 TAPT1Q6NXT6 567 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 TMEM79Q9BSE2 394 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 C17orf80Q9BSJ5 609 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 THUMPD3Q9BV44 507 aaKnown RBP18.72■□□□□ 0.59
USP48-204ENST00000400301 ADGRE3Q9BY15 652 aa18.72■□□□□ 0.59
USP48-204ENST00000400301 ARL5CA6NH57 179 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 ZBBXA8MT70 800 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 SLC5A3P53794 718 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 PITX1P78337 314 aaPredicted RBP18.71■□□□□ 0.59
USP48-204ENST00000400301 NRF1Q16656 503 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 GLT6D1Q7Z4J2 308 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 CTU1Q7Z7A3 348 aaKnown RBP18.71■□□□□ 0.59
USP48-204ENST00000400301 NTAN1Q96AB6 310 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 PPP1R10Q96QC0 940 aaKnown RBP18.71■□□□□ 0.59
USP48-204ENST00000400301 GDAP2Q9NXN4 497 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 ZMYND8Q9ULU4 1186 aaPredicted RBP18.71■□□□□ 0.59
USP48-204ENST00000400301 LTBP4Q8N2S1 1624 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 NRP1O14786 923 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 SNAI1O95863 264 aaPredicted RBP18.71■□□□□ 0.59
USP48-204ENST00000400301 AKT1P31749 480 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 SLC10A2Q12908 348 aaPredicted RBP18.71■□□□□ 0.59
USP48-204ENST00000400301 CARNMT1Q8N4J0 409 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 PRPF18Q99633 342 aaKnown RBP18.71■□□□□ 0.59
USP48-204ENST00000400301 NPAS2Q99743 824 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 CATSPERZQ9NTU4 200 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 SMPD4Q9NXE4 827 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 A0A1W2PQH9 124 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 BTN3A1O00481 513 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 RTN3O95197 1032 aaPredicted RBP18.71■□□□□ 0.59
USP48-204ENST00000400301 CCNCP24863 283 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 RHOAP61586 193 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 MON1AQ86VX9 555 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 THAP11Q96EK4 314 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 RHOBTB2Q9BYZ6 727 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 CLPBQ9H078 707 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 SEPT3Q9UH03 358 aa18.71■□□□□ 0.59
USP48-204ENST00000400301 DPPA5A6NC42 116 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 LIN7AO14910 233 aaPredicted RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 SNRPB2P08579 225 aaKnown RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 ZNF23P17027 643 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 IRF9Q00978 393 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 ZNF460Q14592 562 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 MIER2Q8N344 545 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 UBR7Q8N806 425 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 UROC1Q96N76 676 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 NR1H4Q96RI1 486 aaPredicted RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 UBA2Q9UBT2 640 aaPredicted RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 INPP4BO15327 924 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 COL6A2P12110 1019 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 HOXB8P17481 243 aaPredicted RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 PPIDQ08752 370 aaKnown RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 PDK3Q15120 406 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 PSMD5Q16401 504 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 ZNF467Q7Z7K2 595 aaPredicted RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 FSTL5Q8N475 847 aaPredicted RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 SLC7A6OSQ96CW6 309 aaPredicted RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 NPY6RQ99463 290 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 SEMA4BQ9NPR2 832 aaPredicted RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 STARD7Q9NQZ5 370 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 SIRPGQ9P1W8 387 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 SLC27A5Q9Y2P5 690 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 AP4S1Q9Y587 144 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 FGFR3P22607 806 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 TKTP29401 623 aaKnown RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 HK2P52789 917 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 TIGD5Q53EQ6 642 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 ZYG11AQ6WRX3 759 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 SCAMP5Q8TAC9 235 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 IRGQQ8WZA9 623 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 DCUN1D1Q96GG9 259 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 ZNF570Q96NI8 536 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 FAM192AQ9GZU8 254 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 CASS4Q9NQ75 786 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 TRIM16O95361 564 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 MBL2P11226 248 aaPredicted RBP18.7■□□□□ 0.58
USP48-204ENST00000400301 NR6A1Q15406 480 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 PQLC1Q8N2U9 271 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 TRPC4APQ8TEL6 797 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 ACBD6Q9BR61 282 aa18.7■□□□□ 0.58
USP48-204ENST00000400301 GLTPD2A6NH11 291 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 TNFAIP8O95379 198 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 CHRNGP07510 517 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms