RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 HOOK3Q86VS8 718 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF567Q8N184 647 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 HEPHQ9BQS7 1158 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 COX16Q9P0S2 106 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 VPS28Q9UK41 221 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 TMEM110-MUSTN1A8MSY1 372 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 RNF103O00237 685 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 RNGTTO60942 597 aaKnown RBP7.1□□□□□ -1.27
LIMA1-202ENST00000394943 IGSF6O95976 241 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 SP9P0CG40 484 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 MLNP12872 115 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 MMP13P45452 471 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 TAS2R38P59533 333 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 SATB1Q01826 763 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 RALGDSQ12967 914 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 KCNJ11Q14654 390 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 RWDD4Q6NW29 188 aaKnown RBP7.1□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF449Q6P9G9 518 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 Q6ZS52 159 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 AADATQ8N5Z0 425 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 DENND6BQ8NEG7 585 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 ATL2Q8NHH9 583 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 CCHCR1Q8TD31 782 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 CCDC114Q96M63 670 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 ACOX2Q99424 681 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 POLR1EQ9GZS1 481 aaKnown RBP7.1□□□□□ -1.27
LIMA1-202ENST00000394943 POLMQ9NP87 494 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-202ENST00000394943 ZSCAN32Q9NX65 697 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF318Q5VUA4 2279 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 IGHV1OR15-9A0A0B4J2B8 117 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 FAM187AA6NFU0 413 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 H7C0S8 307 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 KCNK3O14649 394 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 NDC80O14777 642 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 PPFIA2O75334 1257 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 PGLSO95336 258 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 NDUFV2P19404 249 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 GRIA4P48058 902 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 GLE1Q53GS7 698 aaKnown RBP7.1□□□□□ -1.27
LIMA1-202ENST00000394943 MARC1Q5VT66 337 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 DSG4Q86SJ6 1040 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 NAT16Q8N8M0 369 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 GAB3Q8WWW8 586 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 SCARF2Q96GP6 870 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-202ENST00000394943 LRFN3Q9BTN0 628 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 MLPHQ9BV36 600 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-202ENST00000394943 CALN1Q9BXU9 219 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 MAK16Q9BXY0 300 aaKnown RBP7.1□□□□□ -1.27
LIMA1-202ENST00000394943 MUC3BQ9H195 1237 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 C2orf42Q9NWW7 574 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 WSB2Q9NYS7 404 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-202ENST00000394943 PLK2Q9NYY3 685 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 SLCO3A1Q9UIG8 710 aa7.1□□□□□ -1.27
LIMA1-202ENST00000394943 TBC1D3BA6NDS4 549 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 STK19P49842 368 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-202ENST00000394943 TCF15Q12870 199 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 TMEM31Q5JXX7 168 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 FAM46CQ5VWP2 391 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 SLC36A4Q6YBV0 504 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 TXNDC5Q8NBS9 432 aaKnown RBP7.09□□□□□ -1.27
LIMA1-202ENST00000394943 PRSS33Q8NF86 280 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 OR8D1Q8WZ84 308 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 ARRDC3Q96B67 414 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 MRGPRX2Q96LB1 330 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 COQ10AQ96MF6 247 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 MAGEE1Q9HCI5 957 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 CASS4Q9NQ75 786 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 KLHL11Q9NVR0 708 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 FBXL21Q9UKT6 434 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 PHTF1Q9UMS5 762 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 C5orf42Q9H799 3197 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 PRR19A6NJB7 356 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 E7ESA3 106 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 MMP12P39900 470 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 CXCL12P48061 93 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 EIF3EP60228 445 aaKnown RBP7.09□□□□□ -1.27
LIMA1-202ENST00000394943 TUBB4BP68371 445 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 GUCY2DQ02846 1103 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 DPTQ07507 201 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 CST6Q15828 149 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 ANKRD20A2Q5SQ80 823 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 ANKRD20A1Q5TYW2 823 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 EMC10Q5UCC4 262 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 ANKRD20A3Q5VUR7 823 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF534Q76KX8 674 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 ZSWIM9Q86XI8 627 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 NRSN1Q8IZ57 195 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 LGMNQ99538 433 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 FRMD8Q9BZ67 464 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-202ENST00000394943 TWSG1Q9GZX9 223 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 PLA2G4CQ9UP65 541 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 FADS3Q9Y5Q0 445 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 NUP205Q92621 2012 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 ANTXRLA6NF34 631 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 K7ERQ8 282 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 AP3B1O00203 1094 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 LRP3O75074 770 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 AP2A1O95782 977 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 FGGP02679 453 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 HOXB2P14652 356 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms