RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CFAP52Q8N1V2 620 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 UMODL1-AS1Q8N2C9 162 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 CARNMT1Q8N4J0 409 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 RTL3Q8N8U3 475 aaKnown RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 FBXO36Q8NEA4 188 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 MGARPQ8TDB4 240 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 SEC16BQ96JE7 1060 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 PRRX2Q99811 253 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 C2orf49Q9BVC5 232 aaPredicted RBP10.37□□□□□ -0.75
VPS53-202ENST00000389040 CHRDQ9H2X0 955 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 LMAN1LQ9HAT1 526 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 RAB6BQ9NRW1 208 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 ELOVL2Q9NXB9 296 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 ZNF212Q9UDV6 495 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 FETUBQ9UGM5 382 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 PLA2G4CQ9UP65 541 aa10.37□□□□□ -0.75
VPS53-202ENST00000389040 MYO10Q9HD67 2058 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 EEF2KO00418 725 aaKnown RBP10.36□□□□□ -0.75
VPS53-202ENST00000389040 CREB3O43889 395 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 KIAA0754O94854 1291 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 MAP3K6O95382 1288 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 SRPRAP08240 638 aaKnown RBP10.36□□□□□ -0.75
VPS53-202ENST00000389040 SSTR1P30872 391 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 SGSHP51688 502 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 GEMIN4P57678 1058 aaKnown RBP10.36□□□□□ -0.75
VPS53-202ENST00000389040 MPP2Q14168 576 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 LRRC14Q15048 493 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 BBS9Q3SYG4 887 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 PARP15Q460N3 678 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 SLC45A4Q5BKX6 768 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 SDE2Q6IQ49 451 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 RWDD4Q6NW29 188 aaKnown RBP10.36□□□□□ -0.75
VPS53-202ENST00000389040 YTHDF3Q7Z739 585 aaKnown RBP10.36□□□□□ -0.75
VPS53-202ENST00000389040 TRABD2AQ86V40 505 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 PALM2Q8IXS6 379 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 CACNA2D3Q8IZS8 1091 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 SPEM1Q8N4L4 309 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 ANKRD42Q8N9B4 389 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 FLCNQ8NFG4 579 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 FEM1AQ9BSK4 669 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 MAGEB5Q9BZ81 275 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 KLC2Q9H0B6 622 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 ACSS3Q9H6R3 686 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 ABCB8Q9NUT2 735 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 PSMC3IPQ9P2W1 217 aaPredicted RBP10.36□□□□□ -0.75
VPS53-202ENST00000389040 RABGEF1Q9UJ41 708 aa10.36□□□□□ -0.75
VPS53-202ENST00000389040 NDRG2Q9UN36 371 aaKnown RBP10.36□□□□□ -0.75
VPS53-202ENST00000389040 FAM72CH0Y354 149 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 PAPSS2O95340 614 aaPredicted RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 DLDP09622 509 aaKnown RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 GOT1P17174 413 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 POLR2EP19388 210 aaKnown RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 CD72P21854 359 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 SERPINB6P35237 376 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 NNMTP40261 264 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 KIR2DL1P43626 348 aaPredicted RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 SLC10A2Q12908 348 aaPredicted RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 MTM1Q13496 603 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 ENPP2Q13822 863 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 DPYSQ14117 519 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 KLHL38Q2WGJ6 581 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 PLEKHG6Q3KR16 790 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 ALFQ53S48 1182 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 FAM72AQ5TYM5 149 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 NCBP2-AS2Q69YL0 99 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 CWF19L1Q69YN2 538 aaKnown RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 FAM72DQ6L9T8 149 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 CXorf57Q6NSI4 855 aaKnown RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 C6orf89Q6UWU4 347 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 C4orf22Q6V702 233 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 ARHGEF18Q6ZSZ5 1173 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 C3orf62Q6ZUJ4 267 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 ADIPOR2Q86V24 386 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 FAM72BQ86X60 149 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 LRRC34Q8IZ02 419 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 BHMTQ93088 406 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 MYEOVQ96EZ4 313 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 P2RY11Q96G91 374 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 QKIQ96PU8 341 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS53-202ENST00000389040 FRMD8Q9BZ67 464 aaPredicted RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 NSRP1Q9H0G5 558 aaKnown RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 FBRSL1Q9HCM7 1045 aaKnown RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 TMPRSS4Q9NRS4 437 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 NKIRAS1Q9NYS0 192 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 SENP1Q9P0U3 644 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 DLGAP2Q9P1A6 1054 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 NEU3Q9UQ49 428 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 RAD54BQ9Y620 910 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 FAM47DPA6NHR8 397 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 RAMP2O60895 175 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 GCATO75600 419 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 EGFP01133 1207 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 RHOCP08134 193 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 VIMP08670 466 aaKnown RBP10.35□□□□□ -0.75
VPS53-202ENST00000389040 KRT15P19012 456 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 AMPD1P23109 780 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 HOXA6P31267 233 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 ELK3P41970 407 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 MAGEA6P43360 314 aa10.35□□□□□ -0.75
VPS53-202ENST00000389040 GNA12Q03113 381 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms