RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 TREML1Q86YW5 311 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 MRGPRX2Q96LB1 330 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 FAM167BQ9BTA0 163 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 C1orf21Q9H246 121 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 VPS45Q9NRW7 570 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 ZNF358Q9NW07 568 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 SLC39A10Q9ULF5 831 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 G3V2L1 256 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 LINC00271P0C7V0 271 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 ARCN1P48444 511 aaKnown RBP21.79■■□□□ 1.08
TRIM54-202ENST00000380075 HK2P52789 917 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 TUBB3Q13509 450 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 SLC12A1Q13621 1099 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 USP10Q14694 798 aaKnown RBP21.79■■□□□ 1.08
TRIM54-202ENST00000380075 POU6F1Q14863 301 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 MS4A13Q5J8X5 152 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 RAPH1Q70E73 1250 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 SPPL2BQ8TCT7 592 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 NUDCD1Q96RS6 583 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 EBF4Q9BQW3 602 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 NOL6Q9H6R4 1146 aaKnown RBP21.79■■□□□ 1.08
TRIM54-202ENST00000380075 DCLRE1BQ9H816 532 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 CAB39LQ9H9S4 337 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 TLR8Q9NR97 1041 aaKnown RBP21.79■■□□□ 1.08
TRIM54-202ENST00000380075 MCM8Q9UJA3 840 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 SZT2Q5T011 3432 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 ENO1P06733 434 aaKnown RBP21.78■■□□□ 1.08
TRIM54-202ENST00000380075 PBX3P40426 434 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 GPR15P49685 360 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 ALDH18A1P54886 795 aaKnown RBP21.78■■□□□ 1.08
TRIM54-202ENST00000380075 RABGAP1LQ5R372 815 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 SPOUT1Q5T280 376 aaKnown RBP21.78■■□□□ 1.08
TRIM54-202ENST00000380075 SDHAF4Q5VUM1 108 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 FBXO32Q969P5 355 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 SPATA17Q96L03 361 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 RANBP9Q96S59 729 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 OXCT2Q9BYC2 517 aaPredicted RBP21.78■■□□□ 1.08
TRIM54-202ENST00000380075 TREX1Q9NSU2 369 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 B2RBV5 119 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 SOX1O00570 391 aaPredicted RBP21.78■■□□□ 1.08
TRIM54-202ENST00000380075 PEX11BO96011 259 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 FGFR3P22607 806 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 RAP1GDS1P52306 607 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 THOC5Q13769 683 aaKnown RBP21.78■■□□□ 1.08
TRIM54-202ENST00000380075 DLG2Q15700 870 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 KDELC1Q6UW63 502 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 KIAA0408Q6ZU52 694 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 NSMCE1Q8WV22 266 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 IMP4Q96G21 291 aaKnown RBP21.78■■□□□ 1.08
TRIM54-202ENST00000380075 C1QTNF1Q9BXJ1 281 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.78■■□□□ 1.08
TRIM54-202ENST00000380075 OXSMQ9NWU1 459 aa21.78■■□□□ 1.08
TRIM54-202ENST00000380075 HEATR9A2RTY3 570 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 PMPCBO75439 489 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 VAPBO95292 243 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 AHSGP02765 367 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 TPBGLP0DKB5 382 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 GM2AP17900 193 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 CRABP2P29373 138 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 WNT3AP56704 352 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 USP46P62068 366 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 IRF9Q00978 393 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 ELAVL2Q12926 359 aaKnown RBP21.77■■□□□ 1.08
TRIM54-202ENST00000380075 FAM171A1Q5VUB5 890 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 ESRP1Q6NXG1 681 aaKnown RBP21.77■■□□□ 1.08
TRIM54-202ENST00000380075 ZYG11AQ6WRX3 759 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 CALML6Q8TD86 181 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 CLP1Q92989 425 aaKnown RBP21.77■■□□□ 1.08
TRIM54-202ENST00000380075 TIFAQ96CG3 184 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 ATP13A1Q9HD20 1204 aa21.77■■□□□ 1.08
TRIM54-202ENST00000380075 HSPA4LO95757 839 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 PGM1P36871 562 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 IDH3AP50213 366 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 RING1Q06587 406 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 EFEMP1Q12805 493 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 MARC1Q5VT66 337 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.76■■□□□ 1.07
TRIM54-202ENST00000380075 TEX26Q8N6G2 289 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 ATAD1Q8NBU5 361 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 C2CD4AQ8NCU7 369 aaPredicted RBP21.76■■□□□ 1.07
TRIM54-202ENST00000380075 C2orf15Q8WU43 125 aaKnown RBP21.76■■□□□ 1.07
TRIM54-202ENST00000380075 ACE2Q9BYF1 805 aaPredicted RBP21.76■■□□□ 1.07
TRIM54-202ENST00000380075 CDH19Q9H159 772 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 SLC28A3Q9HAS3 691 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 PNPOQ9NVS9 261 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 NYNRINQ9P2P1 1898 aaKnown RBP21.76■■□□□ 1.07
TRIM54-202ENST00000380075 PRR5-ARHGAP8B1AHC4 643 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 GOLGA8TH3BQL2 631 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 ZNF195O14628 629 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 IGLV3-27P01718 113 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 ALDH2P05091 517 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 GNAZP19086 355 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 ABCG1P45844 678 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 KPNA1P52294 538 aaPredicted RBP21.76■■□□□ 1.07
TRIM54-202ENST00000380075 RAB10P61026 200 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 ARHGAP8P85298 464 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 ILF2Q12905 390 aaKnown RBP21.76■■□□□ 1.07
TRIM54-202ENST00000380075 GPR17Q13304 367 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 RCN2Q14257 317 aa21.76■■□□□ 1.07
TRIM54-202ENST00000380075 TSNAXIP1Q2TAA8 658 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms