RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 KIFC1Q9BW19 673 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 OSBPL11Q9BXB4 747 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 DNAI2Q9GZS0 605 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 NSMCE4AQ9NXX6 385 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 CIDEBQ9UHD4 219 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 H3BNH8 94 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 PIRO00625 290 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 TRIM24O15164 1050 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 SLC25A27O95847 323 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 CYP2C9P11712 490 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 STMN1P16949 149 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 ALDH3B2P48448 385 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 TKTL1P51854 596 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 C1QTNF8P60827 252 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 SOX4Q06945 474 aaPredicted RBP16.56■□□□□ 0.24
SDC4-201ENST00000372733 LRP8Q14114 963 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 FASTKQ14296 549 aaKnown RBP16.56■□□□□ 0.24
SDC4-201ENST00000372733 MARCH8Q5T0T0 291 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 HEXDCQ8WVB3 486 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 ELMO2Q96JJ3 720 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 TEKT5Q96M29 485 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 ULBP1Q9BZM6 244 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 MRPL46Q9H2W6 279 aaKnown RBP16.56■□□□□ 0.24
SDC4-201ENST00000372733 NCKIPSDQ9NZQ3 722 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 RBPJLQ9UBG7 517 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 PPP1R1BQ9UD71 204 aaPredicted RBP16.56■□□□□ 0.24
SDC4-201ENST00000372733 TRHDEQ9UKU6 1024 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 UBQLN1Q9UMX0 589 aaKnown RBP16.56■□□□□ 0.24
SDC4-201ENST00000372733 YJEFN3A6XGL0 299 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 ZNF839A8K0R7 811 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 MAGEB3O15480 346 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 NPHS1O60500 1241 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 MT-CO1P00395 513 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 CKMT2P17540 419 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 KCNA5P22460 613 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 MAP3K7CLP57077 242 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 GJA9P57773 515 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 TAS2R39P59534 338 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 GALNT2Q10471 571 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 GRIK4Q16099 956 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 NAPEPLDQ6IQ20 393 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 CLEC20AQ6ZU45 233 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 PAQR9Q6ZVX9 377 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 ARMCX2Q7L311 632 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 SPPL2BQ8TCT7 592 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 SLC39A3Q9BRY0 314 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 C16orf70Q9BSU1 422 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 NOL11Q9H8H0 719 aaKnown RBP16.55■□□□□ 0.24
SDC4-201ENST00000372733 CDHR5Q9HBB8 845 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 OLAHQ9NV23 265 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 SLC2A6Q9UGQ3 507 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 MYRFQ9Y2G1 1151 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 TIPRLO75663 272 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 ARNTP27540 789 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 CDK9P50750 372 aaKnown RBP16.55■□□□□ 0.24
SDC4-201ENST00000372733 PITRM1Q5JRX3 1037 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 C6orf10Q5SRN2 563 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 ESRP1Q6NXG1 681 aaKnown RBP16.55■□□□□ 0.24
SDC4-201ENST00000372733 FAM43BQ6ZT52 329 aaPredicted RBP16.55■□□□□ 0.24
SDC4-201ENST00000372733 PIWIL4Q7Z3Z4 852 aaKnown RBP16.55■□□□□ 0.24
SDC4-201ENST00000372733 FIBCD1Q8N539 461 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 OR9I1Q8NGQ6 314 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 RMND5BQ96G75 393 aaPredicted RBP16.55■□□□□ 0.24
SDC4-201ENST00000372733 TNIP3Q96KP6 325 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 HNRNPABQ99729 332 aaKnown RBP16.55■□□□□ 0.24
SDC4-201ENST00000372733 DDIT4Q9NX09 232 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 GMEB1Q9Y692 573 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 TSC2P49815 1807 aa16.55■□□□□ 0.24
SDC4-201ENST00000372733 PSMD12O00232 456 aaPredicted RBP16.54■□□□□ 0.24
SDC4-201ENST00000372733 AURKAO14965 403 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 NCAM2O15394 837 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 MT-CYBP00156 380 aaPredicted RBP16.54■□□□□ 0.24
SDC4-201ENST00000372733 COL6A2P12110 1019 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 SLC1A2P43004 574 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 PSMD8P48556 350 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 PLK1P53350 603 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 ZNF560Q96MR9 790 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 CAMKK2Q96RR4 588 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 MED10Q9BTT4 135 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 ELP3Q9H9T3 547 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 PNPLA3Q9NST1 481 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 SMIM28A0A1B0GU29 152 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 TCRBV3S1A0A5B6 114 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 H3BRB1 525 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 FZD9O00144 591 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 MTSS1O43312 755 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 HTRA2O43464 458 aaPredicted RBP16.54■□□□□ 0.24
SDC4-201ENST00000372733 CCDC166P0CW27 439 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 STX5Q13190 355 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 SQLEQ14534 574 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 PKN3Q6P5Z2 889 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 ALKAL1Q6UXT8 129 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 ARHGAP36Q6ZRI8 547 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 CHSY3Q70JA7 882 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 GPRIN1Q7Z2K8 1008 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 RNF135Q8IUD6 432 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 ERI1Q8IV48 349 aaKnown RBP16.54■□□□□ 0.24
SDC4-201ENST00000372733 IPMKQ8NFU5 416 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 DIS3LQ8TF46 1054 aaKnown RBP16.54■□□□□ 0.24
SDC4-201ENST00000372733 IRGQQ8WZA9 623 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms