RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 MAPRE3Q9UPY8 281 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 A0A1W2PPM1 405 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 TK2O00142 265 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 KCNH1O95259 989 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 CNPP09543 421 aaKnown RBP11.54□□□□□ -0.56
PTPRF-203ENST00000372407 FGRP09769 529 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 GOT1P17174 413 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 CD86P42081 329 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 IDH2P48735 452 aaKnown RBP11.54□□□□□ -0.56
PTPRF-203ENST00000372407 TOP3AQ13472 1001 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-203ENST00000372407 PCBP1Q15365 356 aaKnown RBP eCLIP11.54□□□□□ -0.562e-6■■■■■ 32.7
PTPRF-203ENST00000372407 SWT1Q5T5J6 900 aaKnown RBP11.54□□□□□ -0.56
PTPRF-203ENST00000372407 POTEHQ6S545 545 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 CCDC149Q6ZUS6 474 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 NEK10Q6ZWH5 1172 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 WDR48Q8TAF3 677 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 CLIC5Q9NZA1 410 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 XPR1Q9UBH6 696 aa11.54□□□□□ -0.56
PTPRF-203ENST00000372407 DYTNA2CJ06 578 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 MYL12BO14950 172 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 BUD23O43709 281 aaKnown RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 ULK1O75385 1050 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 CYP7B1O75881 506 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 PCDH8O95206 1070 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 HGFP14210 728 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 EPHA3P29320 983 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 HPCAL1P37235 193 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 FEN1P39748 380 aaKnown RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 MATKP42679 507 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 MAPK10P53779 464 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 PLCL1Q15111 1095 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 PTPRNQ16849 979 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 MFSD4BQ5TF39 518 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 LIPMQ5VYY2 423 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 HGSNATQ68CP4 663 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 KBTBD2Q8IY47 623 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 ULK2Q8IYT8 1036 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 IL31RAQ8NI17 732 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 DNAJB14Q8TBM8 379 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 BBS4Q96RK4 519 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 OMDQ99983 421 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 SPRTNQ9H040 489 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 HES2Q9Y543 173 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 MRPL42Q9Y6G3 142 aaKnown RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 CLUHO75153 1309 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 SHPRHQ149N8 1683 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 BCLAF3A2AJT9 711 aaKnown RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 STX11O75558 287 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 IFNGR2P38484 337 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 TNFSF9P41273 254 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 EIF2B2P49770 351 aaKnown RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 SCNN1GP51170 649 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 FSCN1Q16658 493 aaKnown RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 SHROOM1Q2M3G4 852 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 CATSPERGQ6ZRH7 1159 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 AMER2Q8N7J2 671 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 PPP3R2Q96LZ3 170 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 MLPHQ9BV36 600 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 HDHD2Q9H0R4 259 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 LRRC4CQ9HCJ2 640 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 UXTQ9UBK9 157 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 PCDHB12Q9Y5F1 795 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 RIC1Q4ADV7 1423 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 EFCAB10A6NFE3 127 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 SNAP91O60641 907 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 ERBB2P04626 1255 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 NTRK1P04629 796 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 COX7A2P14406 83 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 TTPAP49638 278 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 HSPA14Q0VDF9 509 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 EEF1DP3Q658K8 133 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 CDC73Q6P1J9 531 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 PACS1Q6VY07 963 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 TNS4Q8IZW8 715 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 LRRC52Q8N7C0 313 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 RCN3Q96D15 328 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 KREMEN1Q96MU8 473 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 SEMA3CQ99985 751 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 SNX15Q9NRS6 342 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 PRKAG3Q9UGI9 489 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 TRIM17Q9Y577 477 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 KPNA3O00505 521 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 TRAFD1O14545 582 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-203ENST00000372407 RPN2P04844 631 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 FLT3P36888 993 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 CYP2A13Q16696 494 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 PAGE2BQ5JRK9 111 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 SPESP1Q6UW49 350 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 MACC1Q6ZN28 852 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 PLPPR4Q7Z2D5 763 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 ENKURQ8TC29 256 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 CCDC3Q9BQI4 270 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 ASB8Q9H765 288 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 RNF19AQ9NV58 838 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 TMCO1Q9UM00 188 aa11.53□□□□□ -0.56
PTPRF-203ENST00000372407 UBXN8O00124 270 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 CYP2A6P11509 494 aaPredicted RBP11.52□□□□□ -0.56
PTPRF-203ENST00000372407 CKBP12277 381 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 ADSSP30520 456 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 BNIP2Q12982 314 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms