RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 HMGB4Q8WW32 186 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 C5orf34Q96MH7 638 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 TIPINQ9BVW5 301 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 EBPLQ9BY08 206 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF395Q9H8N7 513 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 PNO1Q9NRX1 252 aaKnown RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 GBAP04062 536 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 ELFN1P0C7U0 828 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 LMO2P25791 158 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 SERPINA4P29622 427 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 MASP1P48740 699 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 COPAP53621 1224 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 MRPS6P82932 125 aaKnown RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 RHBDF2Q6PJF5 856 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 AGMOQ6ZNB7 445 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 MREGQ8N565 214 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 PYCR2Q96C36 320 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 MAP3K14Q99558 947 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 DUS2Q9NX74 493 aaKnown RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 DCDC2Q9UHG0 476 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 NCAPD2Q15021 1401 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF839A8K0R7 811 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 ADCY6O43306 1168 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 KLHL2O95198 593 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 VIL1P09327 827 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TPBGLP0DKB5 382 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 NQO1P15559 274 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 USP41Q3LFD5 358 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TRIM40Q6P9F5 258 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 RALGPS2Q86X27 583 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 DENND6AQ8IWF6 608 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 FAM46DQ8NEK8 389 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 PYDC1Q8WXC3 89 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CMTM5Q96DZ9 223 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TSSK3Q96PN8 268 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CDK15Q96Q40 435 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 NKIRAS2Q9NYR9 191 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 COPG1Q9Y678 874 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 NFASCO94856 1347 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 RHPN2P1A8MT19 583 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 UBDO15205 165 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 RIPK2O43353 540 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 GUCY1B2O75343 617 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CDK14O94921 469 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 ADRB2P07550 413 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 PECAM1P16284 738 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 RPL10P27635 214 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 SNRPD1P62314 119 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 USP4Q13107 963 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 C16orf72Q14CZ0 275 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CMC1Q7Z7K0 106 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF671Q8TAW3 534 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CLEC4CQ8WTT0 213 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 SLC38A3Q99624 504 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 FGFBP2Q9BYJ0 223 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF518BQ9C0D4 1074 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 PAIP1Q9H074 479 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 EFCAB1Q9HAE3 211 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 DMGDHQ9UI17 866 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 LCMT1Q9UIC8 334 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF232Q9UNY5 417 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CXCL11O14625 94 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 NRP2O60462 931 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 PIGNO95427 931 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 PROCP04070 461 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 FOSL2P15408 326 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 NFE2Q16621 373 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TRIM71Q2Q1W2 868 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 NEK10Q6ZWH5 1172 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 SFRP1Q8N474 314 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TTC39CQ8N584 583 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 DNERQ8NFT8 737 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 ZSWIM1Q9BR11 485 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 MRPL40Q9NQ50 206 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CNTNAP1P78357 1384 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 FAM227AF5H4B4 570 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 F8VZ95 297 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CD3EAPO15446 510 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TOP3BO95985 862 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TFEBP19484 476 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TKTP29401 623 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TOR1AIP1Q5JTV8 583 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 UBE2R2Q712K3 238 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 PTGR2Q8N8N7 351 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CRISPLD1Q9H336 500 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 POPDC2Q9HBU9 364 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 TMA7Q9Y2S6 64 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 FBXO21O94952 628 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 C1RP00736 705 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 SLC6A3Q01959 620 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 PPP1R8Q12972 351 aaKnown RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 KCTD8Q6ZWB6 473 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 PACS2Q86VP3 889 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CYP4Z1Q86W10 505 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 XAGE5Q8WWM1 108 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 MYCBPQ99417 103 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 RNF121Q9H920 327 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 KDM6AO15550 1401 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-202ENST00000357409 CBX6O95503 412 aa7.41□□□□□ -1.22
VPS13A-202ENST00000357409 RPL22P35268 128 aaKnown RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms