RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TPMTP51580 245 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 ZBTB16Q05516 673 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 RAD51Q06609 339 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 NIPAL4Q0D2K0 466 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 BYSLQ13895 437 aaKnown RBP22.42■■□□□ 1.18
SHMT1-203ENST00000354098 OASLQ15646 514 aaKnown RBP22.42■■□□□ 1.18
SHMT1-203ENST00000354098 CCNG2Q16589 344 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 ALG1LQ6GMV1 187 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 WDR5BQ86VZ2 330 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 LONP2Q86WA8 852 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 CAMK1DQ8IU85 385 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 ZNF567Q8N184 647 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 FAM160A2Q8N612 972 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-203ENST00000354098 ARRDC3Q96B67 414 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 TEKT5Q96M29 485 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 FRMD8P1Q9BZ68 369 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-203ENST00000354098 USP36Q9P275 1121 aaKnown RBP22.42■■□□□ 1.18
SHMT1-203ENST00000354098 CYP8B1Q9UNU6 501 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 CCDC163A0A0D9SF12 145 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 A0A1W2PP55 124 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 C5AR1P21730 350 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 CD68P34810 354 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-203ENST00000354098 DRD3P35462 400 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 GDF10P55107 478 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 TCF15Q12870 199 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 SRSF5Q13243 272 aaKnown RBP22.42■■□□□ 1.18
SHMT1-203ENST00000354098 FAM46CQ5VWP2 391 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 GDPD4Q6W3E5 623 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 FAM124AQ86V42 546 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 FAM71DQ8N9W8 422 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 NKD2Q969F2 451 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-203ENST00000354098 LRIG1Q96JA1 1093 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 KLHL32Q96NJ5 620 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 FBXL12Q9NXK8 326 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 AP1S1P61966 158 aa22.41■■□□□ 1.18
SHMT1-203ENST00000354098 MAP7D1Q3KQU3 841 aa22.41■■□□□ 1.18
SHMT1-203ENST00000354098 PID1Q7Z2X4 250 aa22.41■■□□□ 1.18
SHMT1-203ENST00000354098 HDDC3Q8N4P3 179 aa22.41■■□□□ 1.18
SHMT1-203ENST00000354098 GANCQ8TET4 914 aa22.41■■□□□ 1.18
SHMT1-203ENST00000354098 FAM126AQ9BYI3 521 aaPredicted RBP22.41■■□□□ 1.18
SHMT1-203ENST00000354098 KLHL8Q9P2G9 620 aaPredicted RBP22.41■■□□□ 1.18
SHMT1-203ENST00000354098 ZNF148Q9UQR1 794 aa22.41■■□□□ 1.18
SHMT1-203ENST00000354098 PCDHGC4Q9Y5F7 938 aa22.41■■□□□ 1.18
SHMT1-203ENST00000354098 RNASEH2AO75792 299 aaKnown RBP22.4■■□□□ 1.18
SHMT1-203ENST00000354098 CNTN1Q12860 1018 aa22.4■■□□□ 1.18
SHMT1-203ENST00000354098 TTC31Q49AM3 519 aaPredicted RBP22.4■■□□□ 1.18
SHMT1-203ENST00000354098 TUBGCP5Q96RT8 1024 aa22.4■■□□□ 1.18
SHMT1-203ENST00000354098 NAP1L3Q99457 506 aaPredicted RBP22.4■■□□□ 1.18
SHMT1-203ENST00000354098 VAT1Q99536 393 aa22.4■■□□□ 1.18
SHMT1-203ENST00000354098 OMDQ99983 421 aa22.4■■□□□ 1.18
SHMT1-203ENST00000354098 NEUROG2Q9H2A3 272 aa22.4■■□□□ 1.18
SHMT1-203ENST00000354098 SUV39H2Q9H5I1 410 aa22.4■■□□□ 1.18
SHMT1-203ENST00000354098 GLOD4Q9HC38 313 aa22.4■■□□□ 1.18
SHMT1-203ENST00000354098 ZSCAN32Q9NX65 697 aa22.4■■□□□ 1.18
SHMT1-203ENST00000354098 SCML1Q9UN30 329 aa22.4■■□□□ 1.18
SHMT1-203ENST00000354098 F5H423 210 aaPredicted RBP22.39■■□□□ 1.18
SHMT1-203ENST00000354098 MMP2P08253 660 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 DEKP35659 375 aaKnown RBP22.39■■□□□ 1.18
SHMT1-203ENST00000354098 P2RY2P41231 377 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 KCNJ1P48048 391 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 BCL2L1Q07817 233 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 KCTD19Q17RG1 926 aaPredicted RBP22.39■■□□□ 1.18
SHMT1-203ENST00000354098 USP39Q53GS9 565 aaKnown RBP22.39■■□□□ 1.18
SHMT1-203ENST00000354098 ZNF805Q5CZA5 627 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 ANKRD20A2Q5SQ80 823 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 ANKRD20A1Q5TYW2 823 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 ANKRD20A3Q5VUR7 823 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP22.39■■□□□ 1.18
SHMT1-203ENST00000354098 ZBTB44Q8NCP5 570 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 CCDC110Q8TBZ0 833 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 OSBPL1AQ9BXW6 950 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 ATP13A3Q9H7F0 1226 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 HAUS2Q9NVX0 235 aa22.39■■□□□ 1.18
SHMT1-203ENST00000354098 IGHV1OR15-9A0A0B4J2B8 117 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 C16orf96A6NNT2 1141 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 PDE2AO00408 941 aaPredicted RBP22.39■■□□□ 1.17
SHMT1-203ENST00000354098 TRAFD1O14545 582 aaPredicted RBP22.39■■□□□ 1.17
SHMT1-203ENST00000354098 HRO43593 1189 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 ZNF217O75362 1048 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 NFKB1P19838 968 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 CD86P42081 329 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 MAPK8P45983 427 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 GRM3Q14832 879 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 RALGPS1Q5JS13 557 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 DRICH1Q6PGQ1 229 aaPredicted RBP22.39■■□□□ 1.17
SHMT1-203ENST00000354098 PARS2Q7L3T8 475 aaKnown RBP22.39■■□□□ 1.17
SHMT1-203ENST00000354098 PRUNE1Q86TP1 453 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 PRPF39Q86UA1 669 aaKnown RBP22.39■■□□□ 1.17
SHMT1-203ENST00000354098 SPATA22Q8NHS9 363 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 ZNF592Q92610 1267 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 IMP4Q96G21 291 aaKnown RBP22.39■■□□□ 1.17
SHMT1-203ENST00000354098 RBM15Q96T37 977 aaKnown RBP eCLIP22.39■■□□□ 1.17
SHMT1-203ENST00000354098 FERMT1Q9BQL6 677 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 MBD1Q9UIS9 605 aaPredicted RBP22.39■■□□□ 1.17
SHMT1-203ENST00000354098 TRHDEQ9UKU6 1024 aa22.39■■□□□ 1.17
SHMT1-203ENST00000354098 USP34Q70CQ2 3546 aa22.38■■□□□ 1.17
SHMT1-203ENST00000354098 EML5Q05BV3 1969 aa22.38■■□□□ 1.17
SHMT1-203ENST00000354098 IGLV3-19P01714 112 aa22.38■■□□□ 1.17
SHMT1-203ENST00000354098 ITGAVP06756 1048 aa22.38■■□□□ 1.17
SHMT1-203ENST00000354098 ITGB7P26010 798 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms