RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 MTRRQ9UBK8 725 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 TDRD15B5MCY1 1934 aaKnown RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 RFXAPO00287 272 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 HAUS5O94927 633 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 CA3P07451 260 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 CSH1P0DML2 217 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 CSH2P0DML3 217 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 COL6A1P12109 1028 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 VCANP13611 3396 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 SERPINB3P29508 390 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 AVPR1AP37288 418 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 ARFIP2P53365 341 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 ANO4Q32M45 955 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 POM121L1PQ3SYA9 428 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 MARC1Q5VT66 337 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 LDB1Q86U70 411 aaPredicted RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 CAND1Q86VP6 1230 aaKnown RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 ARHGAP18Q8N392 663 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 NT5C3BQ969T7 300 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 ALKBH8Q96BT7 664 aaKnown RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 ANKRD27Q96NW4 1050 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 C20orf96Q9NUD7 363 aaPredicted RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 RRN3Q9NYV6 651 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 AFF4Q9UHB7 1163 aaKnown RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 VPS28Q9UK41 221 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 HNRNPCP07910 306 aaKnown RBP eCLIP13.23□□□□□ -0.296e-7■□□□□ 8.9
COL18A1-201ENST00000342220 CDH18Q13634 790 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 UNC5AQ6ZN44 842 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 DNAJC5GQ8N7S2 189 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 KREMEN2Q8NCW0 462 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 PPP1R14CQ8TAE6 165 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 ZNF398Q8TD17 642 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 C17orf50Q8WW18 174 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 TMEM120AQ9BXJ8 343 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 FRMD8P1Q9BZ68 369 aaPredicted RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 KCNK13Q9HB14 408 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 ZNF334Q9HCZ1 680 aaPredicted RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 ATP13A1Q9HD20 1204 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 INSL5Q9Y5Q6 135 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 IQANK1A0A1B0GTG1 560 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 ZNF840PA6NDX5 716 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 SNAP91O60641 907 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 TACR2P21452 398 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 ZBTB16Q05516 673 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 CBX3Q13185 183 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 PTPRCAPQ14761 206 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 TEX44Q53QW1 395 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 WASHC2DQ5SRD0 308 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 C9orf50Q5SZB4 431 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 RAPH1Q70E73 1250 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 RASSF3Q86WH2 238 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 ELMOD1Q8N336 334 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 AGR3Q8TD06 166 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 TMEM175Q9BSA9 504 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 TLE6Q9H808 572 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 IL23AQ9NPF7 189 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.22□□□□□ -0.29
COL18A1-201ENST00000342220 TMEM189-UBE2V1I3L0A0 370 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 TBL1XO60907 577 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 RHOCP08134 193 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 SLC2A3P11169 496 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 SCNN1AP37088 669 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 ETV4P43268 484 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 PTDSS1P48651 473 aaKnown RBP13.22□□□□□ -0.29
COL18A1-201ENST00000342220 SGSHP51688 502 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 NEK3P51956 506 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 ZNF177Q13360 481 aaPredicted RBP13.22□□□□□ -0.29
COL18A1-201ENST00000342220 GALNT3Q14435 633 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 KHDC1Q4VXA5 237 aaKnown RBP13.22□□□□□ -0.29
COL18A1-201ENST00000342220 TTC7BQ86TV6 843 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 SPATA6LQ8N4H0 392 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 CNTD1Q8N815 330 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 NTAN1Q96AB6 310 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 BTN2A3PQ96KV6 586 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 GCNAQ96QF7 691 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 CFAP97Q9P2B7 532 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 TLR6Q9Y2C9 796 aa13.22□□□□□ -0.29
COL18A1-201ENST00000342220 OPHN1O60890 802 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 HLA-DQB2P05538 268 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 CCNFP41002 786 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 KCNJ11Q14654 390 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 PTPRRQ15256 657 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 SPDYAQ5MJ70 313 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 PPM1LQ5SGD2 360 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 CCDC117Q8IWD4 279 aaPredicted RBP13.21□□□□□ -0.29
COL18A1-201ENST00000342220 ENDOVQ8N8Q3 282 aaKnown RBP13.21□□□□□ -0.29
COL18A1-201ENST00000342220 SLC44A1Q8WWI5 657 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 VWCEQ96DN2 955 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 TCEAL4Q96EI5 215 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 OXNAD1Q96HP4 312 aaPredicted RBP13.21□□□□□ -0.29
COL18A1-201ENST00000342220 APOPT1Q96IL0 206 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 ZDHHC4Q9NPG8 344 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 SPATA7Q9P0W8 599 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 TMCO1Q9UM00 188 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 TEX264Q9Y6I9 313 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 SDR42E2A6NKP2 422 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 DNAJC6O75061 913 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 KLKB1P03952 638 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 DHRS4L1P0CG22 281 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 COG7P83436 770 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms