RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CPEB1Q9BZB8 566 aaKnown RBP22.44■■□□□ 1.18
SDC3-202ENST00000339394 SLC6A17Q9H1V8 727 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 PCYOX1Q9UHG3 505 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 GPR37L1O60883 481 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 RNASEH1O60930 286 aaKnown RBP22.43■■□□□ 1.18
SDC3-202ENST00000339394 PRNPP04156 253 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 ZSCAN5DPP0CG00 497 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 AVPR2P30518 371 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 IHHQ14623 411 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 ITPRIPL1Q6GPH6 555 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 DSG4Q86SJ6 1040 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 PRPF39Q86UA1 669 aaKnown RBP22.43■■□□□ 1.18
SDC3-202ENST00000339394 CACUL1Q86Y37 369 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 TMIEQ8NEW7 156 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 IMP4Q96G21 291 aaKnown RBP22.43■■□□□ 1.18
SDC3-202ENST00000339394 LRIG1Q96JA1 1093 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 GBA3Q9H227 469 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 RSPH14Q9UHP6 348 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 ZDBF2Q9HCK1 2354 aa22.43■■□□□ 1.18
SDC3-202ENST00000339394 F5H423 210 aaPredicted RBP22.42■■□□□ 1.18
SDC3-202ENST00000339394 MMP2P08253 660 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 GABRG2P18507 467 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 NDUFV2P19404 249 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 ACTN2P35609 894 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 CD86P42081 329 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 RPS14P62263 151 aaKnown RBP22.42■■□□□ 1.18
SDC3-202ENST00000339394 GRM3Q14832 879 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 ZNF776Q68DI1 518 aaPredicted RBP22.42■■□□□ 1.18
SDC3-202ENST00000339394 ANO7Q6IWH7 933 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 ARHGEF18Q6ZSZ5 1173 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 CAMK1DQ8IU85 385 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 SPATA22Q8NHS9 363 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 PIP4K2CQ8TBX8 421 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 GRK7Q8WTQ7 553 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 HMGB4Q8WW32 186 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 FCRL5Q96RD9 977 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 TUBGCP5Q96RT8 1024 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 RBM15Q96T37 977 aaKnown RBP eCLIP22.42■■□□□ 1.183e-9■■■■■ 30.8
SDC3-202ENST00000339394 KRT12Q99456 494 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 ATP13A3Q9H7F0 1226 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 SHROOM3Q8TF72 1996 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 PRR33A8MZF0 331 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 PAPSS2O95340 614 aaPredicted RBP22.42■■□□□ 1.18
SDC3-202ENST00000339394 PIGNO95427 931 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 MT-CYBP00156 380 aaPredicted RBP22.42■■□□□ 1.18
SDC3-202ENST00000339394 UGT2B4P06133 528 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 SERPINF2P08697 491 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 C7P10643 843 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 C2orf54Q08AI8 447 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 CST6Q15828 149 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 GDPD4Q6W3E5 623 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 C1orf210Q8IVY1 113 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 CAMKK1Q8N5S9 505 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 DTWD2Q8NBA8 298 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 MDGA1Q8NFP4 955 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 SIPA1Q96FS4 1042 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 OSBPL1AQ9BXW6 950 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 NEU2Q9Y3R4 380 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 PCDHGC4Q9Y5F7 938 aa22.42■■□□□ 1.18
SDC3-202ENST00000339394 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP22.41■■□□□ 1.18
SDC3-202ENST00000339394 K7ESF4 209 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 ALDH1A2O94788 518 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 METTL18O95568 372 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 ECEL1O95672 775 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 PSMB4P28070 264 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 RPL22P35268 128 aaKnown RBP22.41■■□□□ 1.18
SDC3-202ENST00000339394 PSMD8P48556 350 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 METAP1P53582 386 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 SKOR1P84550 965 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 BCL2L1Q07817 233 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 TRIP13Q15645 432 aaPredicted RBP22.41■■□□□ 1.18
SDC3-202ENST00000339394 PARP6Q2NL67 630 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 POM121L1PQ3SYA9 428 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 FAM46CQ5VWP2 391 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 PRCCQ92733 491 aaPredicted RBP22.41■■□□□ 1.18
SDC3-202ENST00000339394 SLCO2A1Q92959 643 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 TADA1Q96BN2 335 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 RUNDC3BQ96NL0 473 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 GORASP1Q9BQQ3 440 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 SUV39H2Q9H5I1 410 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 UBP1Q9NZI7 540 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 PAK5Q9P286 719 aa22.41■■□□□ 1.18
SDC3-202ENST00000339394 C1QTNF3-AMACRE9PGA6 284 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 KPNA3O00505 521 aaPredicted RBP22.4■■□□□ 1.18
SDC3-202ENST00000339394 TRAFD1O14545 582 aaPredicted RBP22.4■■□□□ 1.18
SDC3-202ENST00000339394 MID1O15344 667 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 APBB3O95704 486 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 GAS8O95995 478 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 SERPINA4P29622 427 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 SLC8A1P32418 973 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 PGBD3Q8N328 593 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 MNS1Q8NEH6 495 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 OXNAD1Q96HP4 312 aaPredicted RBP22.4■■□□□ 1.18
SDC3-202ENST00000339394 ZNF641Q96N77 438 aaPredicted RBP22.4■■□□□ 1.18
SDC3-202ENST00000339394 KLHL32Q96NJ5 620 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 PCDH9Q9HC56 1237 aa22.4■■□□□ 1.18
SDC3-202ENST00000339394 BCCIPQ9P287 314 aaKnown RBP eCLIP22.4■■□□□ 1.18
SDC3-202ENST00000339394 LAMTOR5O43504 91 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 ADH1BP00325 375 aa22.39■■□□□ 1.18
SDC3-202ENST00000339394 KRT14P02533 472 aa22.39■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms