RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 FAM98BQ52LJ0 330 aaKnown RBP10.27□□□□□ -0.77
CHD3-201ENST00000330494 LRP10Q7Z4F1 713 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 LDB1Q86U70 411 aaPredicted RBP10.27□□□□□ -0.77
CHD3-201ENST00000330494 APLFQ8IW19 511 aaPredicted RBP10.27□□□□□ -0.77
CHD3-201ENST00000330494 CHPFQ8IZ52 775 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 MAML3Q96JK9 1138 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 B3GALT6Q96L58 329 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 RIBC2Q9H4K1 309 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 CFAP97Q9P2B7 532 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 GNPTGQ9UJJ9 305 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 PRDM4Q9UKN5 801 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 SMIM35A0A1B0GVV1 85 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 A0A1W2PPM1 405 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 H3BN98 237 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 FAM20BO75063 409 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 C4BPAP04003 597 aaKnown RBP10.27□□□□□ -0.77
CHD3-201ENST00000330494 ADH1AP07327 375 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 LTA4HP09960 611 aaKnown RBP10.27□□□□□ -0.77
CHD3-201ENST00000330494 DGKAP23743 735 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 PPP2R1BP30154 601 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 SNAP47Q5SQN1 464 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 RHBDF2Q6PJF5 856 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 PACS2Q86VP3 889 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 DHFR2Q86XF0 187 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 GDPD5Q8WTR4 605 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 FERD3LQ96RJ6 166 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 BCAS3Q9H6U6 928 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 VTI1BQ9UEU0 232 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 ATP6V1HQ9UI12 483 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 FAM237AA0A1B0GTK4 181 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 SMIM28A0A1B0GU29 152 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 PTGES3LE9PB15 166 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 UBXN8O00124 270 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 TSPAN1O60635 241 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 CD48P09326 243 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 SLC9A9Q8IVB4 645 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 TADA1Q96BN2 335 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 RAB21Q9UL25 225 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 C2orf71A6NGG8 1288 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 UMPSP11172 480 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 S100A3P33764 101 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 MRPS22P82650 360 aaKnown RBP10.26□□□□□ -0.77
CHD3-201ENST00000330494 FBXO48Q5FWF7 155 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 PLEKHA7Q6IQ23 1121 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 PYROXD2Q8N2H3 581 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 TMEM132CQ8N3T6 1108 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 MTERF3Q96E29 417 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 TTPALQ9BTX7 342 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 TNKS2Q9H2K2 1166 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 CD84Q9UIB8 345 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 AGO1Q9UL18 857 aaKnown RBP10.26□□□□□ -0.77
CHD3-201ENST00000330494 SLC12A4Q9UP95 1085 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 TRBV23OR9-2A0A075B6M9 112 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 TCRBV7S2A1N4TA0A589 114 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 H0Y858 1186 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 MC4RP32245 332 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 PREPLQ4J6C6 727 aaPredicted RBP10.26□□□□□ -0.77
CHD3-201ENST00000330494 C10orf107Q8IVU9 208 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 BHLHE22Q8NFJ8 381 aaPredicted RBP10.26□□□□□ -0.77
CHD3-201ENST00000330494 DNAJB14Q8TBM8 379 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 VAT1Q99536 393 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 AASDHPPTQ9NRN7 309 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 ATG7O95352 703 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 FASP25445 335 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 TAF5Q15542 800 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 FGD2Q7Z6J4 655 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 CMC1Q7Z7K0 106 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 STK32CQ86UX6 486 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 XYLT1Q86Y38 959 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 OR6Y1Q8NGX8 325 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 PPP1R16AQ96I34 528 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 KCTD15Q96SI1 283 aaPredicted RBP10.26□□□□□ -0.77
CHD3-201ENST00000330494 C1orf50Q9BV19 199 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 SLIT3O75094 1523 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 ARL5CA6NH57 179 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 GMFGO60234 142 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 ACRP10323 421 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 TCF3P15923 654 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 PBX3P40426 434 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 CDK16Q00536 496 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 ATAD3BQ5T9A4 648 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 COMMD2Q86X83 199 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 DCLRE1BQ9H816 532 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 PCDH18Q9HCL0 1135 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 MORF4L1Q9UBU8 362 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 ADAM28Q9UKQ2 775 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 FAM47E-STBD1D6RA91 191 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 LYPLA1O75608 230 aaPredicted RBP10.26□□□□□ -0.77
CHD3-201ENST00000330494 PSMB9P28065 219 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 HPCAL1P37235 193 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 GUCA1AP43080 201 aaPredicted RBP10.26□□□□□ -0.77
CHD3-201ENST00000330494 ZC3H7AQ8IWR0 971 aaKnown RBP10.26□□□□□ -0.77
CHD3-201ENST00000330494 C7orf61Q8IZ16 206 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 ALG3Q92685 438 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 P2RY11Q96G91 374 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 PCYOX1Q9UHG3 505 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 DUSP12Q9UNI6 340 aa10.26□□□□□ -0.77
CHD3-201ENST00000330494 REXO2Q9Y3B8 237 aaKnown RBP10.26□□□□□ -0.77
CHD3-201ENST00000330494 ZNF839A8K0R7 811 aa10.25□□□□□ -0.77
CHD3-201ENST00000330494 FGRP09769 529 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms