RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 IRF1P10914 325 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 CHRNB2P17787 502 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 PSMA4P25789 261 aaKnown RBP3.54□□□□□ -1.84
HMGB1-201ENST00000326004 MAN1A1P33908 653 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 TTKP33981 857 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 GABRB2P47870 512 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 ZNF81P51508 661 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 CCR9P51686 369 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 RALBP1Q15311 655 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 SLC9B1Q4ZJI4 515 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 PLEKHO1Q53GL0 409 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-201ENST00000326004 KRTAP5-3Q6L8H2 238 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 TMEM71Q6P5X7 295 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 ATF7IPQ6VMQ6 1270 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 SLC16A12Q6ZSM3 486 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 MOB3CQ70IA8 216 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 PIM3Q86V86 326 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 DIS3L2Q8IYB7 885 aaKnown RBP3.54□□□□□ -1.84
HMGB1-201ENST00000326004 RBFAQ8N0V3 343 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 ZNF548Q8NEK5 533 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-201ENST00000326004 RASSF8Q8NHQ8 419 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 TDRD7Q8NHU6 1098 aaKnown RBP3.54□□□□□ -1.84
HMGB1-201ENST00000326004 GABPB2Q8TAK5 448 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-201ENST00000326004 CEP76Q8TAP6 659 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 ADAMTS15Q8TE58 950 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 SLC35F5Q8WV83 523 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 SLC25A28Q96A46 364 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 OTULINQ96BN8 352 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 HMCESQ96FZ2 354 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 KLHL15Q96M94 604 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 LBHD1Q9BQE6 289 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-201ENST00000326004 FOXP1Q9H334 677 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-201ENST00000326004 MVB12BQ9H7P6 319 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 SMC4Q9NTJ3 1288 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 OLA1Q9NTK5 396 aaKnown RBP3.54□□□□□ -1.84
HMGB1-201ENST00000326004 ZBTB40Q9NUA8 1239 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 C20orf141Q9NUB4 165 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 NAALADL1Q9UQQ1 740 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 NACADO15069 1562 aa3.54□□□□□ -1.84
HMGB1-201ENST00000326004 TDRD9Q8NDG6 1382 aaKnown RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 TYW5A2RUC4 315 aaKnown RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 OVOL3O00110 214 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 SLC25A17O43808 307 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 BAIAP3O94812 1187 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 DDX58O95786 925 aaKnown RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 HEXAP06865 529 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 FGF2P09038 288 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 HSPA1AP0DMV8 641 aaKnown RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 HSPA1BP0DMV9 641 aaKnown RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 UBL4AP11441 157 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 TNFRSF1BP20333 461 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 CHMP24386 653 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 RYKP34925 604 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 CPOXP36551 454 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 NR4A2P43354 598 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 RXRGP48443 463 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 POLD2P49005 469 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 CTCFP49711 727 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 CDH12P55289 794 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 GEMIN4P57678 1058 aaKnown RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 SELENOVP59797 346 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 NEXNQ0ZGT2 675 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 PTGR1Q14914 329 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 VEPH1Q14D04 833 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 TSTQ16762 297 aaKnown RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 GSTA3Q16772 222 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 HIST2H2ACQ16777 129 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 DUSP6Q16828 381 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 PRTGQ2VWP7 1150 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 DCAF6Q58WW2 860 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 EPHA10Q5JZY3 1008 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 ZKSCAN2Q63HK3 967 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 ZNF425Q6IV72 752 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 FAM180BQ6P0A1 224 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 TMTC3Q6ZXV5 915 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 TBC1D26Q86UD7 250 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 GPAT4Q86UL3 456 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 DENND6AQ8IWF6 608 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 CADM3Q8N126 398 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 NRACQ8N912 160 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 TEX45Q8NA69 505 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 ENGASEQ8NFI3 743 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 ETNPPLQ8TBG4 499 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 METTL6Q8TCB7 284 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 UCMAQ8WVF2 138 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 ZNF778Q96MU6 729 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 H2AFJQ9BTM1 129 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 ISCUQ9H1K1 167 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 CDT1Q9H211 546 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 BRF2Q9HAW0 419 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 KRCC1Q9NPI7 259 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 SIRT3Q9NTG7 399 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-201ENST00000326004 ANKRD10Q9NXR5 420 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 AASSQ9UDR5 926 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 CARD8Q9Y2G2 431 aa3.53□□□□□ -1.84
HMGB1-201ENST00000326004 ZNF521Q96K83 1311 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 ERCC6L2Q5T890 1561 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 BAZ1AQ9NRL2 1556 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 LDLRAD4O15165 306 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 SEC14L2O76054 403 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms