RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 MRPS31Q92665 395 aaKnown RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 CDT1Q9H211 546 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 EBF2Q9HAK2 575 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 MAN1C1Q9NR34 630 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 DNAAF2Q9NVR5 837 aaKnown RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 ING3Q9NXR8 418 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 INVSQ9Y283 1065 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 WDR37Q9Y2I8 494 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 NRCAMQ92823 1304 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 CRTAMO95727 393 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 NFICP08651 508 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 MBL2P11226 248 aaPredicted RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 AKR1D1P51857 326 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 ATP12AP54707 1039 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 KCNT2Q6UVM3 1135 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 SATL1Q86VE3 508 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 KIAA0319LQ8IZA0 1049 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 TTC30BQ8N4P2 665 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 METTL6Q8TCB7 284 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 CELF6Q96J87 481 aaKnown RBP11.62□□□□□ -0.55
VPS39-201ENST00000318006 CEP41Q9BYV8 373 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 FBXO44Q9H4M3 255 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 NT5MQ9NPB1 228 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 PCDHA11Q9Y5I1 949 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 FADS3Q9Y5Q0 445 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 SNX8Q9Y5X2 465 aa11.62□□□□□ -0.55
VPS39-201ENST00000318006 WARSP23381 471 aaKnown RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 PLK1P53350 603 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 SRP54P61011 504 aaKnown RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 MZT2AQ6P582 158 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 ALG3Q92685 438 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 PCDHB5Q9Y5E4 795 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 TRPV2Q9Y5S1 764 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 LMO7Q8WWI1 1683 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 TMCC2O75069 709 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 KLHL18O94889 574 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 CKMP06732 381 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 ERVK-10P10266 1014 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 KPNA1P52294 538 aaPredicted RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 RAB25P57735 213 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 PHKG1Q16816 387 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 RFX4Q33E94 735 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 GALNT18Q6P9A2 607 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 SH3BP5LQ7L8J4 393 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 HS6ST3Q8IZP7 471 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 OR5B17Q8NGF7 314 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 TPD52L3Q96J77 140 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 CLPTM1LQ96KA5 538 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 CITED4Q96RK1 184 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 CLPBQ9H078 707 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 PDGFCQ9NRA1 345 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 CDH22Q9UJ99 828 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 LEF1Q9UJU2 399 aaPredicted RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 SF3B1O75533 1304 aaKnown RBP eCLIP11.61□□□□□ -0.551e-7■■■■■ 51.7
VPS39-201ENST00000318006 H3BN98 237 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 HOXB8P17481 243 aaPredicted RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 FEN1P39748 380 aaKnown RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 GRIA4P48058 902 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 SCNN1BP51168 640 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 ADAM17P78536 824 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 LGALS3BPQ08380 585 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 USP4Q13107 963 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 TYSND1Q2T9J0 566 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 ARHGAP15Q53QZ3 475 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 MARC1Q5VT66 337 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 PAGE2Q7Z2X7 111 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 HPS6Q86YV9 775 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 HIPK1Q86Z02 1210 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 TRPM4Q8TD43 1214 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 HTRA1Q92743 480 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 KLRG1Q96E93 195 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 CADM1Q9BY67 442 aaKnown RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 ELOVL4Q9GZR5 314 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 MOV10Q9HCE1 1003 aaKnown RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 ATP6V1HQ9UI12 483 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 STAT5AP42229 794 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 IDH2P48735 452 aaKnown RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 ARHGAP36Q6ZRI8 547 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 PHF13Q86YI8 300 aaPredicted RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 SKA1Q96BD8 255 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 MFSD14AQ96MC6 490 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 TUBGCP5Q96RT8 1024 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 TBCDQ9BTW9 1192 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 FGFBP2Q9BYJ0 223 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 CDHR5Q9HBB8 845 aa11.61□□□□□ -0.55
VPS39-201ENST00000318006 TLR8Q9NR97 1041 aaKnown RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 CCDC59Q9P031 241 aaKnown RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 GPC6Q9Y625 555 aaPredicted RBP11.61□□□□□ -0.55
VPS39-201ENST00000318006 KCNK1O00180 336 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 STX11O75558 287 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 BPGMP07738 259 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 RHOCP08134 193 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 ATP5F1P24539 256 aaPredicted RBP11.6□□□□□ -0.55
VPS39-201ENST00000318006 TNFSF9P41273 254 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 SLC1A5Q15758 541 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 PAGE2BQ5JRK9 111 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 ATAD3BQ5T9A4 648 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 SDE2Q6IQ49 451 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 CDC73Q6P1J9 531 aa11.6□□□□□ -0.55
VPS39-201ENST00000318006 CRTC3Q6UUV7 619 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms