RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MLYCDO95822 493 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SCGB1C2P0DMR2 95 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 S100A4P26447 101 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 DCDC1P59894 354 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 RHDQ02161 417 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ACOX1Q15067 660 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CYB5D1Q6P9G0 228 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 C16orf86Q6ZW13 317 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 BANPQ8N9N5 519 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 AP3S1Q92572 193 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 NT5C1BQ96P26 610 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF670Q9BS34 389 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CIPCQ9C0C6 399 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 POLR1EQ9GZS1 481 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 STN1Q9H668 368 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TRPV4Q9HBA0 871 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PDGFCQ9NRA1 345 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ABCD2Q9UBJ2 740 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 UBQLN2Q9UHD9 624 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 EGFL7Q9UHF1 273 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 DBR1Q9UK59 544 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PCTPQ9UKL6 214 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PCDHGA2Q9Y5H1 932 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PCDHA11Q9Y5I1 949 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 M0R129 80 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC31A2O15432 143 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 H2AFYO75367 372 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CRTAPO75718 401 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TMEM11P17152 192 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 KELP23276 732 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TFDP2Q14188 446 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PREPLQ4J6C6 727 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CACHD1Q5VU97 1274 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 C7orf61Q8IZ16 206 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF709Q8N972 641 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 NFATC2IPQ8NCF5 419 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 LINS1Q8NG48 757 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SPATA22Q8NHS9 363 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TSEN15Q8WW01 171 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CPA5Q8WXQ8 436 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 MTG1Q9BT17 334 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PCIF1Q9H4Z3 704 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC2A9Q9NRM0 540 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 KCMF1Q9P0J7 381 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SPACA6W5XKT8 324 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 UHRF1BP1Q6BDS2 1440 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ESYT3A0FGR9 886 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 FADS2P1A8MWK0 482 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 LCMT2O60294 686 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ZBED4O75132 1171 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 IFNGP01579 166 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM86B2P0C5J1 330 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 AZGP1P25311 298 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 GP5P40197 560 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CDH4P55283 916 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 RHOBP62745 196 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TXNL4AP83876 142 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CD83Q01151 205 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TAP1Q03518 808 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 MPP3Q13368 585 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 XRCC4Q13426 336 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 VARS2Q5ST30 1063 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 LCN1P1Q5VSP4 162 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF529Q6P280 563 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PSRC1Q6PGN9 363 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PRR22Q8IZ63 422 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SPATA20Q8TB22 786 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TEFMQ96QE5 360 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 DPCDQ9BVM2 203 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 UBE2TQ9NPD8 197 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TMEM9Q9P0T7 183 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TNFRSF10DQ9UBN6 386 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF608Q9ULD9 1512 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CRYM-AS1A6NIL9 109 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 EIF5AP63241 154 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 POU4F1Q01851 419 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF33AQ06730 810 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 E2F2Q14209 437 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ARHGAP19Q14CB8 494 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 EXOC3L2Q2M3D2 409 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PTPN20Q4JDL3 420 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 TRIM40Q6P9F5 258 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CCNI2Q6ZMN8 369 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 FBXO33Q7Z6M2 555 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PDZD9Q8IXQ8 264 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM217AQ8IXS0 508 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF619Q8N2I2 560 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 AMER2Q8N7J2 671 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ANGPTL6Q8NI99 470 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 BLNKQ8WV28 456 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SNX33Q8WV41 574 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SEMA4DQ92854 862 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 GJA10Q969M2 543 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CNDP2Q96KP4 475 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 KANSL2Q9H9L4 492 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 A0A087WWV3 80 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CYP2D7A0A087X1C5 515 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SOWAHDA6NJG2 315 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 IFNAR1P17181 557 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 AP3M2P53677 418 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms