RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 OR1G1P47890 313 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 NRLP54845 237 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 TCHHL1Q5QJ38 904 aaPredicted RBP10.46□□□□□ -0.73
UPF3B-201ENST00000276201 ATG14Q6ZNE5 492 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 EMC1Q8N766 993 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 PCDH19Q8TAB3 1148 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 ADAMTS16Q8TE57 1224 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 CCDC124Q96CT7 223 aaKnown RBP10.46□□□□□ -0.73
UPF3B-201ENST00000276201 TMEM169Q96HH4 297 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 ZNF597Q96LX8 424 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 PPP1R10Q96QC0 940 aaKnown RBP10.46□□□□□ -0.73
UPF3B-201ENST00000276201 UHRF1Q96T88 793 aaPredicted RBP10.46□□□□□ -0.73
UPF3B-201ENST00000276201 CPNE1Q99829 537 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 OSBPL11Q9BXB4 747 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 GRIP2Q9C0E4 1043 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 PLGRKTQ9HBL7 147 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 UTP6Q9NYH9 597 aaKnown RBP10.46□□□□□ -0.73
UPF3B-201ENST00000276201 TJP2Q9UDY2 1190 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 PCDHGA4Q9Y5G9 962 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 BRWD1Q9NSI6 2320 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 CITO14578 2027 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 GOLGA8QA0A0J9YX86 632 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 SMIM28A0A1B0GU29 152 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 SH3PXD2BA1X283 911 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 GOLGA8OA6NCC3 632 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 GOLGA8NF8WBI6 632 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 IL18RAPO95256 599 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 ALDH2P05091 517 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 THP07101 528 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 CXCL8P10145 99 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 ATICP31939 592 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 GP5P40197 560 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 PPIDQ08752 370 aaKnown RBP10.46□□□□□ -0.74
UPF3B-201ENST00000276201 USP4Q13107 963 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 TUSC3Q13454 348 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 MTM1Q13496 603 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 STILQ15468 1287 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 SLC10A6Q3KNW5 377 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 ADGRD2Q7Z7M1 963 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 CLEC14AQ86T13 490 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 DDX53Q86TM3 631 aaKnown RBP10.46□□□□□ -0.74
UPF3B-201ENST00000276201 DSELQ8IZU8 1212 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 RXFP2Q8WXD0 754 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 ANKRD36BP1Q96IX9 119 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 ZMAT2Q96NC0 199 aaKnown RBP10.46□□□□□ -0.74
UPF3B-201ENST00000276201 TCF25Q9BQ70 676 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 PAAF1Q9BRP4 392 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 MRPL1Q9BYD6 325 aaKnown RBP10.46□□□□□ -0.74
UPF3B-201ENST00000276201 COG4Q9H9E3 785 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 CYP4F11Q9HBI6 524 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 VPS45Q9NRW7 570 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 VTI1BQ9UEU0 232 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 CDH7Q9ULB5 785 aa10.46□□□□□ -0.74
UPF3B-201ENST00000276201 CASTOR2A6NHX0 329 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 ACOT8O14734 319 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 DCXO43602 365 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 CILPO75339 1184 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 METTL18O95568 372 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 KCNE1P15382 129 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 NCF2P19878 526 aaPredicted RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 ME2P23368 584 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 CD97P48960 835 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 NUP107P57740 925 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 HYAL1Q12794 435 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 FLOT2Q14254 428 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 SKIV2LQ15477 1246 aaKnown RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 SPANXN3Q5MJ09 141 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 PLPP4Q5VZY2 271 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 RWDD4Q6NW29 188 aaKnown RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 CARM1Q86X55 608 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 MPP5Q8N3R9 675 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 LENG8Q96PV6 779 aaPredicted RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 TCF7L2Q9NQB0 619 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 PTBP2Q9UKA9 531 aaKnown RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 PDCD11Q14690 1871 aaKnown RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 TRIM64A6NGJ6 449 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 MATN2O00339 956 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 CLASP2O75122 1294 aaKnown RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 STAU1O95793 577 aaKnown RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 EFEMP2O95967 443 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 CD19P15391 556 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 ZNF26P17031 533 aaPredicted RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 PSMC3P17980 439 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 TPP2P29144 1249 aaPredicted RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 HADHAP40939 763 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 SOX4Q06945 474 aaPredicted RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 COL19A1Q14993 1142 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 DPYSL2Q16555 572 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 KYAT1Q16773 422 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 ZNF667Q5HYK9 610 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 FAM102AQ5T9C2 384 aaPredicted RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 SCARA3Q6AZY7 606 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 PDE12Q6L8Q7 609 aaKnown RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 TRNP1Q6NT89 227 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 LILRA2Q8N149 483 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 ZBTB8BQ8NAP8 495 aaPredicted RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 RIN3Q8TB24 985 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 TRIM56Q9BRZ2 755 aaKnown RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 ZBP1Q9H171 429 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 MRM3Q9HC36 420 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms