RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CCND3P30281 292 aaPredicted RBP16.81■□□□□ 0.28
VPS54-201ENST00000272322 NPY2RP49146 381 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 HARS2P49590 506 aaKnown RBP16.81■□□□□ 0.28
VPS54-201ENST00000272322 PSEN1P49768 467 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 ARSDP51689 593 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 DSG1Q02413 1049 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 GALNT3Q14435 633 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 RAB41Q5JT25 222 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 PCID2Q5JVF3 399 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 EPGNQ6UW88 154 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 PDCD6IPQ8WUM4 868 aaKnown RBP16.81■□□□□ 0.28
VPS54-201ENST00000272322 HDAC10Q969S8 669 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 GPAMQ9HCL2 828 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 S100A14Q9HCY8 104 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 GMIPQ9P107 970 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 GMPR2Q9P2T1 348 aaKnown RBP16.81■□□□□ 0.28
VPS54-201ENST00000272322 NELFEP18615 380 aaKnown RBP16.81■□□□□ 0.28
VPS54-201ENST00000272322 CCNG1P51959 295 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 THOP1P52888 689 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 KLHDC9Q8NEP7 349 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 OLFM1Q99784 485 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 SENP6Q9GZR1 1112 aaPredicted RBP16.81■□□□□ 0.28
VPS54-201ENST00000272322 SEMA6AQ9H2E6 1030 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 MMADHCQ9H3L0 296 aaPredicted RBP16.81■□□□□ 0.28
VPS54-201ENST00000272322 FAM124BQ9H5Z6 455 aaPredicted RBP16.81■□□□□ 0.28
VPS54-201ENST00000272322 SP110Q9HB58 689 aa16.81■□□□□ 0.28
VPS54-201ENST00000272322 FBRSL1Q9HCM7 1045 aaKnown RBP16.81■□□□□ 0.28
VPS54-201ENST00000272322 NCF1BA6NI72 391 aaPredicted RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 NCF1CA8MVU1 366 aaPredicted RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 SUPT7LO94864 414 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 NCF1P14598 390 aaPredicted RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 ARL1P40616 181 aaPredicted RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 RALGDSQ12967 914 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 MGAT5BQ3V5L5 792 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 DENND5AQ6IQ26 1287 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 CYP2R1Q6VVX0 501 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 SPATA24Q86W54 205 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 MYLK4Q86YV6 388 aaPredicted RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 ANKRD49Q8WVL7 239 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 RPRD1AQ96P16 312 aaPredicted RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 ECSITQ9BQ95 431 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 COPS7BQ9H9Q2 264 aaPredicted RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 ZNF212Q9UDV6 495 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 HDAC3O15379 428 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 FGFR3P22607 806 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 RAB10P61026 200 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 PRAMEP78395 509 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 SLC12A1Q13621 1099 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 C10orf120Q5SQS8 335 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 GPR158Q5T848 1215 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 LIPMQ5VYY2 423 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 TRIM67Q6ZTA4 783 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 BNIPLQ7Z465 357 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 ESAMQ96AP7 390 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 MRGPRX2Q96LB1 330 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 PCDHAC1Q9H158 963 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 AAR2Q9Y312 384 aaKnown RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 PTCH2Q9Y6C5 1203 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 RNASEH1O60930 286 aaKnown RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 MPOP05164 745 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 MMEL1Q495T6 779 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 PIK3R6Q5UE93 754 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 DSELQ8IZU8 1212 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 APBB2Q92870 758 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 ACBD6Q9BR61 282 aa16.8■□□□□ 0.28
VPS54-201ENST00000272322 UXTQ9UBK9 157 aaPredicted RBP16.8■□□□□ 0.28
VPS54-201ENST00000272322 KCNU1A8MYU2 1149 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 ACVRL1P37023 503 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 IHHQ14623 411 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 LPIN1Q14693 890 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 INSCQ1MX18 579 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 FSCBQ5H9T9 825 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 ACAD11Q709F0 780 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 CYS1Q717R9 158 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 MYEOVQ96EZ4 313 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 TBATAQ96M53 351 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 GPR22Q99680 433 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 MARCH4Q9P2E8 410 aaPredicted RBP16.79■□□□□ 0.28
VPS54-201ENST00000272322 DSEQ9UL01 958 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 UBA6A0AVT1 1052 aaPredicted RBP16.79■□□□□ 0.28
VPS54-201ENST00000272322 GRID2O43424 1007 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 SIX3O95343 332 aaPredicted RBP16.79■□□□□ 0.28
VPS54-201ENST00000272322 IL1BP01584 269 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 YWHAQP27348 245 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 SCAPQ12770 1279 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 HABP4Q5JVS0 413 aaKnown RBP16.79■□□□□ 0.28
VPS54-201ENST00000272322 PM20D1Q6GTS8 502 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 DHDDSQ86SQ9 333 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 PCDHGB4Q9UN71 923 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 CDYLQ9Y232 598 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 PCDHGB5Q9Y5G0 923 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 PEX1O43933 1283 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 CPB1P15086 417 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 CD151P48509 253 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 KCNC1P48547 511 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 MS4A2Q01362 244 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 CYLC2Q14093 348 aaPredicted RBP16.79■□□□□ 0.28
VPS54-201ENST00000272322 FLOT2Q14254 428 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 RASIP1Q5U651 963 aa16.79■□□□□ 0.28
VPS54-201ENST00000272322 LSMEM2Q8N112 164 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms