RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 ASIC4Q96FT7 647 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 GBA2Q9HCG7 927 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 VTA1Q9NP79 307 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PRPF19Q9UMS4 504 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CCDC154A6NI56 674 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 APOA1P02647 267 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 LBPP18428 481 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CDH2P19022 906 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PTPN3P26045 913 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MOGSQ13724 837 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 POLD3Q15054 466 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PRKD1Q15139 912 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SLC9B1Q4ZJI4 515 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MFSD14CQ5VZR4 134 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CUZD1Q86UP6 607 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 VPS33AQ96AX1 596 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PKP2Q99959 881 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 HGH1Q9BTY7 390 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ATP11BQ9Y2G3 1177 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PCDHB12Q9Y5F1 795 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ALPK2Q86TB3 2170 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TOGARAM1Q9Y4F4 1720 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SCAMP3O14828 347 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 FESP07332 822 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TAS2R39P59534 338 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MFSD10Q14728 455 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CDHR3Q6ZTQ4 885 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 DENND6AQ8IWF6 608 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 DCP1BQ8IZD4 617 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ZNF567Q8N184 647 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 OTULINQ96BN8 352 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 C9orf16Q9BUW7 83 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 HPS4Q9NQG7 708 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TSC22D4Q9Y3Q8 395 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CABIN1Q9Y6J0 2220 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 LOXHD1Q8IVV2 1947 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 IRF6O14896 467 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 GRIN3BO60391 1043 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PAGE1O75459 146 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 LINGO3P0C6S8 592 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 NEK2P51955 445 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 C11orf74Q86VG3 221 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 BPIFB6Q8NFQ5 453 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CRYGNQ8WXF5 182 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PDGFDQ9GZP0 370 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ACTR8Q9H981 624 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TRAF6Q9Y4K3 522 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 FAM149AA5PLN7 773 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 AGRPO00253 132 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MSCO60682 206 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SLC2A3P11169 496 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 POU1F1P28069 291 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TPP2P29144 1249 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 TAF1CQ15572 869 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SOWAHAQ2M3V2 549 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 FBXO48Q5FWF7 155 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SATL1Q86VE3 508 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ITFG1Q8TB96 612 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CDCA5Q96FF9 252 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PHF12Q96QT6 1004 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 EIF2AQ9BY44 585 aaKnown RBP4.66□□□□□ -1.66
VPS13C-201ENST00000249837 CATSPERZQ9NTU4 200 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 MORF4L1Q9UBU8 362 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 ZMYM5Q9UJ78 669 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 SLC13A4Q9UKG4 626 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 POMPQ9Y244 141 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 PPME1Q9Y570 386 aa4.66□□□□□ -1.66
VPS13C-201ENST00000249837 HS6ST1O60243 411 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 CPSF4O95639 269 aaKnown RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 AP2A1O95782 977 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 GPD2P43304 727 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 EIF2B2P49770 351 aaKnown RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 SERPINH1P50454 418 aaKnown RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 IL5RAQ01344 420 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 MBTD1Q05BQ5 628 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 ITGADQ13349 1161 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 TIGD7Q6NT04 549 aaPredicted RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 SLC44A2Q8IWA5 706 aaPredicted RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 LRRC52Q8N7C0 313 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 C2orf69Q8N8R5 385 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 EZH1Q92800 747 aaPredicted RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 UTP4Q969X6 686 aaKnown RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 CACYBPQ9HB71 228 aaKnown RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 USP29Q9HBJ7 922 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 MPP6Q9NZW5 540 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 KLRG2A4D1S0 409 aaPredicted RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 CLASP2O75122 1294 aaKnown RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 USP46P62068 366 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 SEMA5AQ13591 1074 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 PTPRNQ16849 979 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 INSCQ1MX18 579 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 TEX44Q53QW1 395 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 SFT2D3Q587I9 215 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 PATL1Q86TB9 770 aaKnown RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 SPPL2CQ8IUH8 684 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 LRTOMTQ8WZ04 291 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 DPEP3Q9H4B8 488 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 ENTPD7Q9NQZ7 604 aa4.65□□□□□ -1.66
VPS13C-201ENST00000249837 RSL24D1Q9UHA3 163 aaKnown RBP4.65□□□□□ -1.66
VPS13C-201ENST00000249837 MTF2Q9Y483 593 aaPredicted RBP4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms