RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 ARHGEF2Q92974 986 aaKnown RBP13.4□□□□□ -0.26
SLIRP-201ENST00000238688 CELF6Q96J87 481 aaKnown RBP13.4□□□□□ -0.26
SLIRP-201ENST00000238688 TRMT61BQ9BVS5 477 aaKnown RBP13.4□□□□□ -0.26
SLIRP-201ENST00000238688 NOL6Q9H6R4 1146 aaKnown RBP13.4□□□□□ -0.26
SLIRP-201ENST00000238688 ARNT2Q9HBZ2 717 aa13.4□□□□□ -0.26
SLIRP-201ENST00000238688 TRPV5Q9NQA5 729 aa13.4□□□□□ -0.26
SLIRP-201ENST00000238688 DNAJC17Q9NVM6 304 aaKnown RBP13.4□□□□□ -0.26
SLIRP-201ENST00000238688 NSMCE4AQ9NXX6 385 aa13.4□□□□□ -0.26
SLIRP-201ENST00000238688 MPP6Q9NZW5 540 aa13.4□□□□□ -0.26
SLIRP-201ENST00000238688 SMG5Q9UPR3 1016 aaKnown RBP13.4□□□□□ -0.26
SLIRP-201ENST00000238688 CHMP2BQ9UQN3 213 aa13.4□□□□□ -0.26
SLIRP-201ENST00000238688 SNX10Q9Y5X0 201 aa13.4□□□□□ -0.26
SLIRP-201ENST00000238688 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.4□□□□□ -0.26
SLIRP-201ENST00000238688 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.39□□□□□ -0.27
SLIRP-201ENST00000238688 FAM237BA0A1B0GVD1 139 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 GFRA2O00451 464 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 KRT37O76014 449 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 USP1O94782 785 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 EPOP01588 193 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 INHBAP08476 426 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 SP9P0CG40 484 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 NFKB1P19838 968 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 GABRR2P28476 465 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 WEE1P30291 646 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 GDI1P31150 447 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 CD68P34810 354 aaPredicted RBP13.39□□□□□ -0.27
SLIRP-201ENST00000238688 MDH1P40925 334 aaKnown RBP13.39□□□□□ -0.27
SLIRP-201ENST00000238688 MSH2P43246 934 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 FCHO2Q0JRZ9 810 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 ZNF177Q13360 481 aaPredicted RBP13.39□□□□□ -0.27
SLIRP-201ENST00000238688 LONRF1Q17RB8 773 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 KCTD16Q68DU8 428 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 RNF43Q68DV7 783 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 SLC26A11Q86WA9 606 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 ARID3BQ8IVW6 561 aaPredicted RBP13.39□□□□□ -0.27
SLIRP-201ENST00000238688 DEPDC1BQ8WUY9 529 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 IGSF8Q969P0 613 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 ZFRQ96KR1 1074 aaKnown RBP13.39□□□□□ -0.27
SLIRP-201ENST00000238688 PWWP2AQ96N64 755 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 AGAP3Q96P47 875 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 XPO6Q96QU8 1125 aaKnown RBP13.39□□□□□ -0.27
SLIRP-201ENST00000238688 BRD9Q9H8M2 597 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 MOCS1Q9NZB8 636 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 BCCIPQ9P287 314 aaKnown RBP eCLIP13.39□□□□□ -0.27
SLIRP-201ENST00000238688 ARHGAP26Q9UNA1 814 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 R4GN57 208 aa13.39□□□□□ -0.27
SLIRP-201ENST00000238688 E2F8A0AVK6 867 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 FAM159BA6NKW6 160 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 PRPF4O43172 522 aaKnown RBP eCLIP13.38□□□□□ -0.27
SLIRP-201ENST00000238688 KRT38O76015 456 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 PRAMEF12O95522 483 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 NRLP54845 237 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 CYP4F8P98187 520 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 GNA12Q03113 381 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 SLC12A1Q13621 1099 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 ALFQ53S48 1182 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 FAXCQ5TGI0 409 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 NLRP9Q7RTR0 991 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 TMEM135Q86UB9 458 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 TRABD2AQ86V40 505 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 ANKMY2Q8IV38 441 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 DENND1CQ8IV53 801 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 CNTD1Q8N815 330 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 FBF1Q8TES7 1133 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 IRF7Q92985 503 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 OTUB2Q96DC9 234 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 HMCESQ96FZ2 354 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 IMP4Q96G21 291 aaKnown RBP13.38□□□□□ -0.27
SLIRP-201ENST00000238688 SGSM3Q96HU1 749 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 PAFAH2Q99487 392 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 WDR83Q9BRX9 315 aaKnown RBP13.38□□□□□ -0.27
SLIRP-201ENST00000238688 SLC46A2Q9BY10 475 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 POLR1EQ9GZS1 481 aaKnown RBP13.38□□□□□ -0.27
SLIRP-201ENST00000238688 ATXN3LQ9H3M9 355 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 CCDC134Q9H6E4 229 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 RBM22Q9NW64 420 aaKnown RBP eCLIP13.38□□□□□ -0.277e-6■■■□□ 17.4
SLIRP-201ENST00000238688 SEPT3Q9UH03 358 aa13.38□□□□□ -0.27
SLIRP-201ENST00000238688 AGO1Q9UL18 857 aaKnown RBP13.38□□□□□ -0.27
SLIRP-201ENST00000238688 CEP250Q9BV73 2442 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 KDELR3O43731 214 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 CNTN5O94779 1100 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 PEX11BO96011 259 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 HMBSP08397 361 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 SSTR1P30872 391 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 HADHAP40939 763 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 RPS9P46781 194 aaKnown RBP13.37□□□□□ -0.27
SLIRP-201ENST00000238688 INO80DQ53TQ3 878 aaPredicted RBP13.37□□□□□ -0.27
SLIRP-201ENST00000238688 GPR158Q5T848 1215 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 ZNF852Q6ZMS4 543 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 UNC5AQ6ZN44 842 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 B4GALNT4Q76KP1 1039 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 MARK2Q7KZI7 788 aaKnown RBP13.37□□□□□ -0.27
SLIRP-201ENST00000238688 TFAP2DQ7Z6R9 452 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 TP53INP2Q8IXH6 220 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 DNAAF3Q8N9W5 541 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 NELL1Q92832 810 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 TADA1Q96BN2 335 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 RANBP9Q96S59 729 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 SMC6Q96SB8 1091 aa13.37□□□□□ -0.27
SLIRP-201ENST00000238688 NELL2Q99435 816 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms