RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 PCNX4Q63HM2 1172 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 ADGRG6Q86SQ4 1221 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 WDSUB1Q8N9V3 476 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 USP38Q8NB14 1042 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 FIG4Q92562 907 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 KAT2BQ92831 832 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 HPS1Q92902 700 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 TEFMQ96QE5 360 aaKnown RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 RNF146Q9NTX7 359 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 EXD2Q9NVH0 621 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CUEDC1Q9NWM3 386 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 MED11Q9P086 117 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 PTGFRNQ9P2B2 879 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CKAP5Q14008 2032 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TOP2BQ02880 1626 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 GSC2O15499 205 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 AMHP03971 560 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 HRGP04196 525 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ALPPL2P10696 532 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 KELP23276 732 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 KLRC2P26717 231 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 WEE1P30291 646 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 LHX1P48742 406 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 PDK2Q15119 407 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF827Q17R98 1081 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TRMT5Q32P41 509 aaKnown RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 GPAT3Q53EU6 434 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 C15orf40Q8WUR7 153 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF669Q96BR6 464 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 CHP1Q99653 195 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ROPN1BQ9BZX4 212 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ROPN1Q9HAT0 212 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TBCCD1Q9NVR7 557 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 C19orf81C9J6K1 198 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 F8VZ95 297 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 DGKIO75912 1065 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 RHOCP08134 193 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 MAPK8P45983 427 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 AFF1P51825 1210 aaKnown RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 RIPPLY1Q0D2K3 151 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ATP1A4Q13733 1029 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 PCID2Q5JVF3 399 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 KIAA0319Q5VV43 1072 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ADNP2Q6IQ32 1131 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 RETSATQ6NUM9 610 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ESPNLQ6ZVH7 1005 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 GAB3Q8WWW8 586 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 CGRRF1Q99675 332 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 WDR12Q9GZL7 423 aaKnown RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 DBNDD1Q9H9R9 158 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 SEMA3GQ9NS98 782 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 RRN3Q9NYV6 651 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TAS2R13Q9NYV9 303 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 MRPS7Q9Y2R9 242 aaKnown RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ABHD14A-ACY1A0A1B0GW23 586 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 KPNA3O00505 521 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 SLC16A4O15374 487 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 FKBP6O75344 327 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 MAP3K6O95382 1288 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 METTL18O95568 372 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 HOXB8P17481 243 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TYMPP19971 482 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 GPD1P21695 349 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 CCR3P51677 355 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 PRKCEQ02156 737 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 SMAD1Q15797 465 aaKnown RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 XKR4Q5GH76 650 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 FAM46CQ5VWP2 391 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 SULT1C3Q6IMI6 304 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TRIM40Q6P9F5 258 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 POC5Q8NA72 575 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 GIMAP5Q96F15 307 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TDRD1Q9BXT4 1180 aaKnown RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TMEM63CQ9P1W3 806 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 MTMR6Q9Y217 621 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 PCF11O94913 1555 aaKnown RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 H0YGN5 161 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 PDE8BO95263 885 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 HOXB9P17482 250 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 EPHB2P29323 1055 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 CRABP2P29373 138 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 MAGEA8P43361 318 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 GDI2P50395 445 aaKnown RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 USP11P51784 963 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 NDUFA9Q16795 377 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ESCO2Q56NI9 601 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 OR56A4Q8NGH8 313 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ERMAPQ96PL5 475 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TUBGCP5Q96RT8 1024 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 CBWD1Q9BRT8 395 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ADAM7Q9H2U9 754 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ABCB9Q9NP78 766 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ABCG2Q9UNQ0 655 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 EMSYQ7Z589 1322 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 LDLRP01130 860 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 CD2P06729 351 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF12P17014 697 aa6.07□□□□□ -1.44
SCN1A-212ENST00000636194 TFE3P19532 575 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-212ENST00000636194 FGFR4P22455 802 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms