RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 HIPK3Q9H422 1215 aa9□□□□□ -0.97
VCL-206ENST00000623461 BARX2Q9UMQ3 279 aaPredicted RBP9□□□□□ -0.97
VCL-206ENST00000623461 NWD1Q149M9 1564 aa9□□□□□ -0.97
VCL-206ENST00000623461 ZC3H4Q9UPT8 1303 aaKnown RBP9□□□□□ -0.97
VCL-206ENST00000623461 IRGMA1A4Y4 181 aa9□□□□□ -0.97
VCL-206ENST00000623461 SEC22BO75396 215 aa9□□□□□ -0.97
VCL-206ENST00000623461 THRBP10828 461 aa9□□□□□ -0.97
VCL-206ENST00000623461 TCF4P15884 667 aa9□□□□□ -0.97
VCL-206ENST00000623461 PAICSP22234 425 aaKnown RBP9□□□□□ -0.97
VCL-206ENST00000623461 STARP49675 285 aa9□□□□□ -0.97
VCL-206ENST00000623461 POU6F1Q14863 301 aa9□□□□□ -0.97
VCL-206ENST00000623461 FAM131AQ6UXB0 335 aa9□□□□□ -0.97
VCL-206ENST00000623461 SPATA19Q7Z5L4 167 aa9□□□□□ -0.97
VCL-206ENST00000623461 MILR1Q7Z6M3 343 aa9□□□□□ -0.97
VCL-206ENST00000623461 PDSS2Q86YH6 399 aa9□□□□□ -0.97
VCL-206ENST00000623461 KRT78Q8N1N4 520 aa9□□□□□ -0.97
VCL-206ENST00000623461 LZTR1Q8N653 840 aa9□□□□□ -0.97
VCL-206ENST00000623461 PACRGLQ8N7B6 248 aa9□□□□□ -0.97
VCL-206ENST00000623461 UXS1Q8NBZ7 420 aa9□□□□□ -0.97
VCL-206ENST00000623461 PCDH18Q9HCL0 1135 aa9□□□□□ -0.97
VCL-206ENST00000623461 ZNF224Q9NZL3 707 aa9□□□□□ -0.97
VCL-206ENST00000623461 ANKRD52Q8NB46 1076 aa9□□□□□ -0.97
VCL-206ENST00000623461 REXO5Q96IC2 774 aaKnown RBP9□□□□□ -0.97
VCL-206ENST00000623461 PHF12Q96QT6 1004 aa9□□□□□ -0.97
VCL-206ENST00000623461 SYT15Q9BQS2 421 aa9□□□□□ -0.97
VCL-206ENST00000623461 SNX15Q9NRS6 342 aa9□□□□□ -0.97
VCL-206ENST00000623461 RIMS1Q86UR5 1692 aaKnown RBP9□□□□□ -0.97
VCL-206ENST00000623461 PCP4L1A6NKN8 68 aa9□□□□□ -0.97
VCL-206ENST00000623461 MYL3P08590 195 aa9□□□□□ -0.97
VCL-206ENST00000623461 TIE1P35590 1138 aa9□□□□□ -0.97
VCL-206ENST00000623461 ETFBP38117 255 aa9□□□□□ -0.97
VCL-206ENST00000623461 RAB10P61026 200 aa9□□□□□ -0.97
VCL-206ENST00000623461 CDK18Q07002 472 aa9□□□□□ -0.97
VCL-206ENST00000623461 CYP1B1Q16678 543 aa9□□□□□ -0.97
VCL-206ENST00000623461 EMC10Q5UCC4 262 aa9□□□□□ -0.97
VCL-206ENST00000623461 RASSF6Q6ZTQ3 369 aa9□□□□□ -0.97
VCL-206ENST00000623461 TMEM126BQ8IUX1 230 aa9□□□□□ -0.97
VCL-206ENST00000623461 SLC44A2Q8IWA5 706 aaPredicted RBP9□□□□□ -0.97
VCL-206ENST00000623461 DNAJB14Q8TBM8 379 aa9□□□□□ -0.97
VCL-206ENST00000623461 HELQQ8TDG4 1101 aa9□□□□□ -0.97
VCL-206ENST00000623461 LPGAT1Q92604 370 aa9□□□□□ -0.97
VCL-206ENST00000623461 TP53INP1Q96A56 240 aa9□□□□□ -0.97
VCL-206ENST00000623461 SLC7A5P2Q9GIP4 190 aa9□□□□□ -0.97
VCL-206ENST00000623461 TMEM9Q9P0T7 183 aa9□□□□□ -0.97
VCL-206ENST00000623461 DGKBQ9Y6T7 804 aa9□□□□□ -0.97
VCL-206ENST00000623461 E7ENX8 843 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 H3BN98 237 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 SLC22A1O15245 554 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 LRIG2O94898 1065 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 TRUB2O95900 331 aaKnown RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 COL6A2P12110 1019 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 PPP2R1BP30154 601 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 FEN1P39748 380 aaKnown RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 PSMD4P55036 377 aaKnown RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 GMFBP60983 142 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 PPATQ06203 517 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 CDC42EP5Q6NZY7 148 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 GMCL1Q96IK5 515 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 TMEM106CQ9BVX2 250 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 ACTR8Q9H981 624 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 COMMD9Q9P000 198 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 MYO10Q9HD67 2058 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 SLITRK3O94933 977 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 HNF4AP41235 474 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 CSNK2BP67870 215 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 FNBP1LQ5T0N5 605 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 NIPA1Q7RTP0 329 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 MMP19Q99542 508 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 GRHL1Q9NZI5 618 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 PADI4Q9UM07 663 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 PIN4Q9Y237 131 aaKnown RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 STON1Q9Y6Q2 735 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 IFRD1O00458 451 aaPredicted RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 RAD17O75943 681 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 ATF4P18848 351 aaPredicted RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 NKX1-1Q15270 411 aaPredicted RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 UNC5AQ6ZN44 842 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 FAM131BQ86XD5 332 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 OFCC1Q8IZS5 231 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 GMCL1P1Q8NEA9 526 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 SYTL5Q8TDW5 730 aaPredicted RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 RNF157Q96PX1 679 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 SH3BP4Q9P0V3 963 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 PTBP2Q9UKA9 531 aaKnown RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 CCNT2O60583 730 aaKnown RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 UGT1A9O60656 530 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 BANF1O75531 89 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 UPP2O95045 317 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 ARP10275 920 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 UGT1A6P19224 532 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 UGT1A1P22309 533 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 UGT1A4P22310 534 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 UGT1A3P35503 534 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 UGT1A5P35504 534 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 TWF1Q12792 350 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 RBM48Q5RL73 367 aaKnown RBP8.99□□□□□ -0.97
VCL-206ENST00000623461 VSTM1Q6UX27 236 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 KCNK18Q7Z418 384 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 ACOT1Q86TX2 421 aa8.99□□□□□ -0.97
VCL-206ENST00000623461 CLEC10AQ8IUN9 316 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms