RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 CACNA1GO43497 2377 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 NCANO14594 1321 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 KCNU1A8MYU2 1149 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 TMEM114B3SHH9 223 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 CHADO15335 359 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 MFSD11O43934 449 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 FGF19O95750 216 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 MLNP12872 115 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 DGKAP23743 735 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 SLC11A1P49279 550 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 TTPAP49638 278 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 GATMP50440 423 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 GNA12Q03113 381 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 ACSM2AQ08AH3 577 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 TRIP10Q15642 601 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 ACSM2BQ68CK6 577 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 TAPT1Q6NXT6 567 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 FNDC5Q8NAU1 212 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 ZNF516Q92618 1163 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 ZNF556Q9HAH1 456 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 TMBIM4Q9HC24 238 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 SOX13Q9UN79 622 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 FAF1Q9UNN5 650 aaPredicted RBP9.34□□□□□ -0.91
GGA3-223ENST00000621870 YIPF1Q9Y548 306 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 C10orf71Q711Q0 1435 aa9.34□□□□□ -0.91
GGA3-223ENST00000621870 ISM1B1AKI9 464 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 SLC31A1O15431 190 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 SEC22BO75396 215 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 SASH3O75995 380 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 FGF1P05230 155 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 ANXA5P08758 320 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 RHOQP17081 205 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 HOXB8P17481 243 aaPredicted RBP9.34□□□□□ -0.92
GGA3-223ENST00000621870 HLA-DPA1P20036 260 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 MAPK1P28482 360 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 ERVK-21P61565 698 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 ABRQ12979 859 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 DMC1Q14565 340 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 STXBP5Q5T5C0 1151 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 IRAK1BP1Q5VVH5 260 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 FBXO46Q6PJ61 603 aaPredicted RBP9.34□□□□□ -0.92
GGA3-223ENST00000621870 C16orf89Q6UX73 402 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 OTOP3Q7RTS5 596 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 LONP2Q86WA8 852 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 ALLCQ8N6M5 410 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 OR52K2Q8NGK3 314 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 SH3RF2Q8TEC5 729 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 CASP10Q92851 521 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 TWNKQ96RR1 684 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 DPY30Q9C005 99 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 ABCG4Q9H172 646 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 GULP1Q9UBP9 304 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 KLQ9UEF7 1012 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 R3HDM2Q9Y2K5 976 aaKnown RBP9.34□□□□□ -0.92
GGA3-223ENST00000621870 SNX8Q9Y5X2 465 aa9.34□□□□□ -0.92
GGA3-223ENST00000621870 CFAP73A6NFT4 308 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 H3BMM5 538 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 CACNB4O00305 520 aaPredicted RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 MPOP05164 745 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 PDHA1P08559 390 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 SLC35G4P0C7Q5 338 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 TFEBP19484 476 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 WARSP23381 471 aaKnown RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 CHI3L1P36222 383 aaPredicted RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 NFYCQ13952 458 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 CERCAMQ5T4B2 595 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 OR4K2Q8NGD2 314 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 NSL1Q96IY1 281 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 FEM1CQ96JP0 617 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 C16orf70Q9BSU1 422 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 EFCAB1Q9HAE3 211 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 STK39Q9UEW8 545 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 COQ4Q9Y3A0 265 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 REXO2Q9Y3B8 237 aaKnown RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 NID2Q14112 1375 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 UBDO15205 165 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 VNN1O95497 513 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 ITGAVP06756 1048 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 TARSP26639 723 aaKnown RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 MAT2AP31153 395 aaKnown RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 PSMD8P48556 350 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 SEC13P55735 322 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 LPIN1Q14693 890 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 CYP2A13Q16696 494 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 EML3Q32P44 896 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 AASDHQ4L235 1098 aaPredicted RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 CCDC185Q8N715 623 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 PLD5Q8N7P1 536 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 HERVK_113Q902F9 699 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 INPP5DQ92835 1189 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 EMID1Q96A84 441 aaPredicted RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 HGH1Q9BTY7 390 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 OXCT2Q9BYC2 517 aaPredicted RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 NEUROG2Q9H2A3 272 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 LRRC19Q9H756 370 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 NMUR1Q9HB89 426 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 SEMA4BQ9NPR2 832 aaPredicted RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 IMP3Q9NV31 184 aaKnown RBP9.33□□□□□ -0.92
GGA3-223ENST00000621870 PCDHGC3Q9UN70 934 aa9.33□□□□□ -0.92
GGA3-223ENST00000621870 ANKDD1BA6NHY2 528 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms