RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 LHX3Q9UBR4 397 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 IPO11Q9UI26 975 aaKnown RBP17.12■□□□□ 0.33
TRIM28-215ENST00000601150 TPX2Q9ULW0 747 aaKnown RBP17.12■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3DA0A087WVF3 549 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3IA0A087WXS9 549 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3EA0A087X179 549 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3KA0A087X1G2 549 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3FA6NER0 549 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-215ENST00000601150 C10orf142B7Z368 130 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3LB9A6J9 549 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 RNF103O00237 685 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 BCAT2O15382 392 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3HP0C7X1 549 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 ITGB7P26010 798 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 CD27P26842 260 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 RAD51Q06609 339 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 RFTN1Q14699 578 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-215ENST00000601150 ANKRD20A8PQ5CZ79 823 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 PIP5KL1Q5T9C9 394 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 LRRC38Q5VT99 294 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3GQ6DHY5 549 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3CQ6IPX1 549 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 ARHGAP36Q6ZRI8 547 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 ERN2Q76MJ5 926 aaKnown RBP17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TP53INP2Q8IXH6 220 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TBC1D3Q8IZP1 549 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-215ENST00000601150 PCDH19Q8TAB3 1148 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 OSBPL1AQ9BXW6 950 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 CAPN10Q9HC96 672 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TFR2Q9UP52 801 aa17.11■□□□□ 0.33
TRIM28-215ENST00000601150 TP53BP1Q12888 1972 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-215ENST00000601150 CEP250Q9BV73 2442 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 SPOPO43791 374 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 BUB1BO60566 1050 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-215ENST00000601150 PALMO75781 387 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 ENGP17813 658 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 COMTP21964 271 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 KDELR1P24390 212 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 GKP32189 559 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 ID4P47928 161 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 NEK3P51956 506 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 LIMK1P53667 647 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 TAS2R38P59533 333 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 PAFAH1B3Q15102 231 aaKnown RBP17.1■□□□□ 0.33
TRIM28-215ENST00000601150 STPG1Q5TH74 334 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 TMEM139Q8IV31 216 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 RHOT1Q8IXI2 618 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 C1orf216Q8TAB5 229 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 FAF2Q96CS3 445 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 RMDN1Q96DB5 314 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 ZNF599Q96NL3 588 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 PREBQ9HCU5 417 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 CACNA1EQ15878 2313 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 SPTBN4Q9H254 2564 aa17.1■□□□□ 0.33
TRIM28-215ENST00000601150 A0A1W2PPC4 97 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 LRRD1A4D1F6 860 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 ZNF487B1APH4 448 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 SYPP08247 313 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 GSDMDP57764 484 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 ODF2Q5BJF6 829 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 ZNF805Q5CZA5 627 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 TMCO4Q5TGY1 634 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 NCBP2-AS2Q69YL0 99 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 FBXL19Q6PCT2 694 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 GDPD4Q6W3E5 623 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 PARS2Q7L3T8 475 aaKnown RBP17.09■□□□□ 0.33
TRIM28-215ENST00000601150 TRIM69Q86WT6 500 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 VSIG1Q86XK7 387 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 LRRC49Q8IUZ0 686 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 ATPAF2Q8N5M1 289 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 RAPGEF5Q92565 580 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 EXOC2Q96KP1 924 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 CALR3Q96L12 384 aaKnown RBP17.09■□□□□ 0.33
TRIM28-215ENST00000601150 CINPQ9BW66 212 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-215ENST00000601150 CPEB1Q9BZB8 566 aaKnown RBP17.09■□□□□ 0.33
TRIM28-215ENST00000601150 TMEM9BQ9NQ34 198 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 FSCN3Q9NQT6 498 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 DDX56Q9NY93 547 aaKnown RBP17.09■□□□□ 0.33
TRIM28-215ENST00000601150 DLL3Q9NYJ7 618 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 REXO2Q9Y3B8 237 aaKnown RBP17.09■□□□□ 0.33
TRIM28-215ENST00000601150 HYOU1Q9Y4L1 999 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 ALG6Q9Y672 507 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 DOCK9Q9BZ29 2069 aa17.09■□□□□ 0.33
TRIM28-215ENST00000601150 DMXL1Q9Y485 3027 aa17.08■□□□□ 0.33
TRIM28-215ENST00000601150 RCCD1A6NED2 376 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 ARHGAP33O14559 1287 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 SLC30A4O14863 429 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 LATO43561 262 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 MFSD11O43934 449 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 MAFKO60675 156 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 KRT1P04264 644 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 UGT2B4P06133 528 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 TNNT1P13805 278 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 ADRB3P13945 408 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 NUDT1P36639 197 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 CSNK1DP48730 415 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 AFF3P51826 1226 aaKnown RBP17.08■□□□□ 0.32
TRIM28-215ENST00000601150 VAV2P52735 878 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 ATXN3P54252 364 aaPredicted RBP17.08■□□□□ 0.32
TRIM28-215ENST00000601150 PPP2CBP62714 309 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms