RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SCNN1BP51168 640 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 MAXP61244 160 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 ITKQ08881 620 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 SLC14A2Q15849 920 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 GLE1Q53GS7 698 aaKnown RBP14.55□□□□□ -0.08
UPF1-211ENST00000600868 FAM182AQ5T1J6 154 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 ATXN7L2Q5T6C5 722 aaPredicted RBP14.55□□□□□ -0.08
UPF1-211ENST00000600868 C9orf64Q5T6V5 341 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 Q6ZVU0 165 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 SRLQ86TD4 932 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 PRUNE1Q86TP1 453 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 TXNDC5Q8NBS9 432 aaKnown RBP14.55□□□□□ -0.08
UPF1-211ENST00000600868 OR2A12Q8NGT7 310 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 ARRDC2Q8TBH0 407 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 IMP4Q96G21 291 aaKnown RBP14.55□□□□□ -0.08
UPF1-211ENST00000600868 EXOC2Q96KP1 924 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 PPP1R2P1Q96PQ5 205 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 SEMA3CQ99985 751 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 TM6SF2Q9BZW4 377 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 RSPH14Q9UHP6 348 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 TTLL3Q9Y4R7 772 aa14.55□□□□□ -0.08
UPF1-211ENST00000600868 CHURC1-FNTBB4DL54 471 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 ALOX15BO15296 676 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 INSIG1O15503 277 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 ADAM23O75077 832 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 KLF8O95600 359 aaPredicted RBP14.54□□□□□ -0.08
UPF1-211ENST00000600868 POP4O95707 220 aaKnown RBP14.54□□□□□ -0.08
UPF1-211ENST00000600868 EPHX1P07099 455 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 NFKB1P19838 968 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 PSMB4P28070 264 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 CCNHP51946 323 aaPredicted RBP14.54□□□□□ -0.08
UPF1-211ENST00000600868 AP1S1P61966 158 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 TUBB4BP68371 445 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 DSC2Q02487 901 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 RAD51Q06609 339 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 NIPAL4Q0D2K0 466 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 CAMK2GQ13555 558 aaPredicted RBP14.54□□□□□ -0.08
UPF1-211ENST00000600868 PRPSAP1Q14558 356 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 GRM3Q14832 879 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 TRIP13Q15645 432 aaPredicted RBP14.54□□□□□ -0.08
UPF1-211ENST00000600868 MYLK3Q32MK0 819 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 EOGTQ5NDL2 527 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 C8orf74Q6P047 294 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 NCEH1Q6PIU2 408 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 DPY19L3Q6ZPD9 716 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 TRIM67Q6ZTA4 783 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 KLHDC8BQ8IXV7 354 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 ZNF366Q8N895 744 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 LRRN4CLQ8ND94 238 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 PJA1Q8NG27 643 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 RPLP0P6Q8NHW5 317 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 CLDN23Q96B33 292 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 TADA1Q96BN2 335 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 LRRC1Q9BTT6 524 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 CPEB1Q9BZB8 566 aaKnown RBP14.54□□□□□ -0.08
UPF1-211ENST00000600868 NOD2Q9HC29 1040 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 ZDHHC4Q9NPG8 344 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 SCUBE2Q9NQ36 999 aa14.54□□□□□ -0.08
UPF1-211ENST00000600868 HECAQ9UBI9 543 aaPredicted RBP14.54□□□□□ -0.08
UPF1-211ENST00000600868 FARP1Q9Y4F1 1045 aaPredicted RBP14.54□□□□□ -0.08
UPF1-211ENST00000600868 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.53□□□□□ -0.08
UPF1-211ENST00000600868 SYNCRIPO60506 623 aaKnown RBP14.53□□□□□ -0.08
UPF1-211ENST00000600868 ATG13O75143 517 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 SIN3BO75182 1162 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 METTL18O95568 372 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 MMP2P08253 660 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 WASP42768 502 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 RPS9P46781 194 aaKnown RBP14.53□□□□□ -0.08
UPF1-211ENST00000600868 SKOR1P84550 965 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 GPS1Q13098 491 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 ELAVL3Q14576 367 aaKnown RBP14.53□□□□□ -0.08
UPF1-211ENST00000600868 PRPF39Q86UA1 669 aaKnown RBP14.53□□□□□ -0.08
UPF1-211ENST00000600868 OR8D1Q8WZ84 308 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 VOPP1Q96AW1 172 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 LRRC45Q96CN5 670 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 LRIG1Q96JA1 1093 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 TUBGCP5Q96RT8 1024 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 GORASP1Q9BQQ3 440 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 HEPHQ9BQS7 1158 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 ERP44Q9BS26 406 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 TRIM51Q9BSJ1 452 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 RAB17Q9H0T7 212 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 MTG2Q9H4K7 406 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 FBRSQ9HAH7 460 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 ETNK1Q9HBU6 452 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 PRSS16Q9NQE7 514 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 RAB6BQ9NRW1 208 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 VPS45Q9NRW7 570 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 ASIC3Q9UHC3 531 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 FAM153AQ9UHL3 310 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 EVLQ9UI08 416 aaPredicted RBP14.53□□□□□ -0.08
UPF1-211ENST00000600868 MMP17Q9ULZ9 603 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 AAR2Q9Y312 384 aaKnown RBP14.53□□□□□ -0.08
UPF1-211ENST00000600868 SIT1Q9Y3P8 196 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 TRIOO75962 3097 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 CKAP5Q14008 2032 aa14.53□□□□□ -0.08
UPF1-211ENST00000600868 NCOR1O75376 2440 aa14.52□□□□□ -0.08
UPF1-211ENST00000600868 TTC24A2A3L6 582 aaPredicted RBP14.52□□□□□ -0.09
UPF1-211ENST00000600868 GOLGA6CA6NDK9 693 aa14.52□□□□□ -0.09
UPF1-211ENST00000600868 GOLGA6BA6NDN3 693 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms