RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 A0A087WV48 116 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 RRP8O43159 456 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 BUB1O43683 1085 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 BRINP1O60477 761 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 CYP1A1P04798 512 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 KRT3P12035 628 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 RHOQP17081 205 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 MMP8P22894 467 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 STAT1P42224 750 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 NSFP46459 744 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 CCDC173Q0VFZ6 552 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 SYCP1Q15431 976 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 BNIPLQ7Z465 357 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 ABI3BPQ7Z7G0 1075 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 ENOX1Q8TC92 643 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 TBC1D31Q96DN5 1066 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 APOLD1Q96LR9 279 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 KLHL32Q96NJ5 620 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 BBC3Q96PG8 261 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 PCDHB18PQ96TA0 734 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 NRSN2Q9GZP1 204 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 ABCG4Q9H172 646 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 FANCLQ9NW38 375 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 LAMA5O15230 3695 aa17.88■□□□□ 0.45
SHKBP1-223ENST00000600552 CPED1A4D0V7 1026 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 NEMP2A6NFY4 417 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 C2CD4BA6NLJ0 364 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 FPGTO14772 594 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 RAMP2O60895 175 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 LRIG2O94898 1065 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 CD160O95971 181 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 GPD1P21695 349 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 ETFBP38117 255 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 ABL2P42684 1182 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 MAPKAPK2P49137 400 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 PDE1CQ14123 709 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 MYLK3Q32MK0 819 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 PYROXD2Q8N2H3 581 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 NEK11Q8NG66 645 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 NAF1Q96HR8 494 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 PCDHB1Q9Y5F3 818 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 RAI2Q9Y5P3 530 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 SHROOM3Q8TF72 1996 aa17.87■□□□□ 0.45
SHKBP1-223ENST00000600552 FASNP49327 2511 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 K7ESM1 405 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 CREB3O43889 395 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 ITIH2P19823 946 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 CDK11BP21127 795 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 RFC1P35251 1148 aaPredicted RBP17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 COPB1P53618 953 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 HDAC4P56524 1084 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 JAM2P57087 298 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 HNRNPKP61978 463 aaKnown RBP eCLIP17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 SNRPD1P62314 119 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 FZD2Q14332 565 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 ZNF805Q5CZA5 627 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 TRIM72Q6ZMU5 477 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 ARCQ7LC44 396 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 TTC7BQ86TV6 843 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 VPS36Q86VN1 386 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 NLRP14Q86W24 1093 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 DCP2Q8IU60 420 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 LMX1AQ8TE12 382 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 MAGEH1Q9H213 219 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 TMEM248Q9NWD8 314 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 NLGN3Q9NZ94 848 aa17.86■□□□□ 0.45
SHKBP1-223ENST00000600552 H3BM21 787 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 SCAMP1O15126 338 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 TSPAN6O43657 245 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 OPA1O60313 960 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 MMP20O60882 483 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 POP4O95707 220 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 GIMD1P0DJR0 217 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 CKMT1AP12532 417 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 JUNDP17535 347 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 PTPN9P43378 593 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 RABIFP47224 123 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 GEMIN4P57678 1058 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 RTP5Q14D33 572 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 TCEA2Q15560 299 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 CDKN3Q16667 212 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 CLEC16AQ2KHT3 1053 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 DEFB133Q30KQ1 61 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 CT47A1Q5JQC4 288 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 TPRG1LQ5T0D9 272 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 MANEALQ5VSG8 457 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 CDKAL1Q5VV42 579 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 WDR59Q6PJI9 974 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 CRTC1Q6UUV9 634 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 IGSF10Q6WRI0 2623 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 KYAT3Q6YP21 454 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 STRADAQ7RTN6 431 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 SLFN11Q7Z7L1 901 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 DCBLD1Q8N8Z6 715 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 ZNF548Q8NEK5 533 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 ANKRD20A12PQ8NF67 263 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 OR2AP1Q8NGE2 309 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 MAPK15Q8TD08 544 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 BAP1Q92560 729 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 FGF11Q92914 225 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms