RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 HOXD9P28356 352 aaPredicted RBP12.95□□□□□ -0.34
UPF1-208ENST00000600012 HARS2P49590 506 aaKnown RBP12.95□□□□□ -0.34
UPF1-208ENST00000600012 TPI1P60174 286 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 CAMK2GQ13555 558 aaPredicted RBP12.95□□□□□ -0.34
UPF1-208ENST00000600012 SNX1Q13596 522 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 NAA30Q147X3 362 aaPredicted RBP12.95□□□□□ -0.34
UPF1-208ENST00000600012 KCTD19Q17RG1 926 aaPredicted RBP12.95□□□□□ -0.34
UPF1-208ENST00000600012 PIK3R6Q5UE93 754 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 TMEM215Q68D42 235 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 NPNTQ6UXI9 565 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 CACUL1Q86Y37 369 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 MMGT1Q8N4V1 131 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 PNPLA1Q8N8W4 532 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 ATP6V0D2Q8N8Y2 350 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 OR2T3Q8NH03 318 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 WFIKKN2Q8TEU8 576 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 SORCS1Q8WY21 1168 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 HAPLN3Q96S86 360 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 GAREM1Q9H706 876 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 TM7SF3Q9NS93 570 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 ETNK2Q9NVF9 386 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 RCOR3Q9P2K3 495 aaPredicted RBP12.95□□□□□ -0.34
UPF1-208ENST00000600012 EIF2B4Q9UI10 523 aaKnown RBP12.95□□□□□ -0.34
UPF1-208ENST00000600012 PCOLCE2Q9UKZ9 415 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 TMEM131Q92545 1883 aa12.95□□□□□ -0.34
UPF1-208ENST00000600012 GOLGA4Q13439 2230 aaKnown RBP12.94□□□□□ -0.34
UPF1-208ENST00000600012 ADAMTS20P59510 1910 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 APC2O95996 2303 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 ZNF487B1APH4 448 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 LRIG2O94898 1065 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 LATS1O95835 1130 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 CAPNS1P04632 268 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 SLC2A3P11169 496 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 PECAM1P16284 738 aaPredicted RBP12.94□□□□□ -0.34
UPF1-208ENST00000600012 OTUD4Q01804 1114 aaKnown RBP12.94□□□□□ -0.34
UPF1-208ENST00000600012 TFDP2Q14188 446 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 CYP1B1Q16678 543 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 FNDC3BQ53EP0 1204 aaKnown RBP12.94□□□□□ -0.34
UPF1-208ENST00000600012 MS4A13Q5J8X5 152 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 RAP1GAP2Q684P5 730 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 NUGGCQ68CJ6 796 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 SLC9A4Q6AI14 798 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 TTC27Q6P3X3 843 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 RFX8Q6ZV50 586 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 C14orf80Q86SX3 495 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 VSIG1Q86XK7 387 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 PLD5Q8N7P1 536 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 C1orf216Q8TAB5 229 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 SETD7Q8WTS6 366 aaKnown RBP12.94□□□□□ -0.34
UPF1-208ENST00000600012 MAGOHBQ96A72 148 aaKnown RBP12.94□□□□□ -0.34
UPF1-208ENST00000600012 BTN2A3PQ96KV6 586 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 EPAS1Q99814 870 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 OSBPL2Q9H1P3 480 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 FBRSQ9HAH7 460 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 IL21RQ9HBE5 538 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 TMEM51Q9NW97 253 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 SAE1Q9UBE0 346 aaPredicted RBP12.94□□□□□ -0.34
UPF1-208ENST00000600012 OR12D3Q9UGF7 316 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 STOML2Q9UJZ1 356 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 NEU3Q9UQ49 428 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 EFR3BQ9Y2G0 817 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 FNDC3AQ9Y2H6 1198 aaKnown RBP12.94□□□□□ -0.34
UPF1-208ENST00000600012 PCDHGB2Q9Y5G2 931 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 DMXL2Q8TDJ6 3036 aa12.94□□□□□ -0.34
UPF1-208ENST00000600012 FASNP49327 2511 aaKnown RBP12.93□□□□□ -0.34
UPF1-208ENST00000600012 TP53BP1Q12888 1972 aaPredicted RBP12.93□□□□□ -0.34
UPF1-208ENST00000600012 GOLGA6L7A0A1B0GV03 622 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 APOC4-APOC2K7ER74 178 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 TAF4O00268 1085 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 FLRT2O43155 660 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 DAPK3O43293 454 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 MAP3K6O95382 1288 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 APOC2P02655 101 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 RHOXF2BP0C7M4 288 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 C7P10643 843 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 HLA-EP13747 358 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 HOXB3P14651 431 aaPredicted RBP12.93□□□□□ -0.34
UPF1-208ENST00000600012 ERCC2P18074 760 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 HLA-FP30511 346 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 KCNJ1P48048 391 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 AFF3P51826 1226 aaKnown RBP12.93□□□□□ -0.34
UPF1-208ENST00000600012 BNC1Q01954 994 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 COL9A2Q14055 689 aaPredicted RBP12.93□□□□□ -0.34
UPF1-208ENST00000600012 DPYSQ14117 519 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 ERCC6LQ2NKX8 1250 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 HLA-BQ31612 363 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 MANEALQ5VSG8 457 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 NCBP2-AS2Q69YL0 99 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 NADSYN1Q6IA69 706 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 C8orf74Q6P047 294 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 CCNI2Q6ZMN8 369 aaPredicted RBP12.93□□□□□ -0.34
UPF1-208ENST00000600012 FAM124AQ86V42 546 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 CHSY1Q86X52 802 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 AHI1Q8N157 1196 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 NETO2Q8NC67 525 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 ACTL9Q8TC94 416 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 SNX19Q92543 992 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 UBXN4Q92575 508 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 TBC1D31Q96DN5 1066 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 CDC6Q99741 560 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms