RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SRGAP2O75044 1071 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 CLDN11O75508 207 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 CELA2BP08218 269 aaPredicted RBP8.82□□□□□ -1
SHKBP1-220ENST00000599716 SLC2A3P11169 496 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 ITIH2P19823 946 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 UCNP55089 124 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 CDH4P55283 916 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 TMPRSS3P57727 454 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 PDE1CQ14123 709 aaPredicted RBP8.82□□□□□ -1
SHKBP1-220ENST00000599716 MORC3Q14149 939 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 ISXQ2M1V0 245 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 TMEM259Q4ZIN3 620 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 TRIM65Q6PJ69 517 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 C11orf57Q6ZUT1 292 aaPredicted RBP8.82□□□□□ -1
SHKBP1-220ENST00000599716 ABI3BPQ7Z7G0 1075 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 SLC47A2Q86VL8 602 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 DRC7Q8IY82 874 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 TTC9Q92623 222 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 LIN37Q96GY3 246 aaPredicted RBP8.82□□□□□ -1
SHKBP1-220ENST00000599716 PRR11Q96HE9 360 aaPredicted RBP8.82□□□□□ -1
SHKBP1-220ENST00000599716 ZNF578Q96N58 590 aaPredicted RBP8.82□□□□□ -1
SHKBP1-220ENST00000599716 TBCBQ99426 244 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 SLC17A9Q9BYT1 436 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 FAM117AQ9C073 453 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 ZDHHC6Q9H6R6 413 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 POLR1BQ9H9Y6 1135 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 DYRK4Q9NR20 520 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 NDFIP2Q9NV92 336 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 NLGN3Q9NZ94 848 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 ATP6V1DQ9Y5K8 247 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 ENTPD2Q9Y5L3 495 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 DOCK4Q8N1I0 1966 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 A6NNZ2 444 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 GOLGA8SH3BPF8 625 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 GCATO75600 419 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 ZMPSTE24O75844 475 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 ALPPL2P10696 532 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 ADRB3P13945 408 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 HGFP14210 728 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 JUNDP17535 347 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 OR1E1P30953 314 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 NOS2P35228 1153 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 CLCN1P35523 988 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 NUDT1P36639 197 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 FLT3P36888 993 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 ACVRL1P37023 503 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 LSSP48449 732 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 CCNHP51946 323 aaPredicted RBP8.81□□□□□ -1
SHKBP1-220ENST00000599716 NEK3P51956 506 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 PDX1P52945 283 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 OXCT1P55809 520 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 KRT83P78385 493 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 ARF5P84085 180 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 NFKB2Q00653 900 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 SLC6A3Q01959 620 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 EIF2B5Q13144 721 aaKnown RBP8.81□□□□□ -1
SHKBP1-220ENST00000599716 PAK1Q13153 545 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 ZSCAN23Q3MJ62 389 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 C5orf22Q49AR2 442 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 EFHC1Q5JVL4 640 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 BROXQ5VW32 411 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 TAF3Q5VWG9 929 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 ATG14Q6ZNE5 492 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 SLC26A9Q7LBE3 791 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 FAM131BQ86XD5 332 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 RYBPQ8N488 228 aaPredicted RBP8.81□□□□□ -1
SHKBP1-220ENST00000599716 TMIEQ8NEW7 156 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 NPY6RQ99463 290 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 KLF6Q99612 283 aaPredicted RBP8.81□□□□□ -1
SHKBP1-220ENST00000599716 C2orf49Q9BVC5 232 aaPredicted RBP8.81□□□□□ -1
SHKBP1-220ENST00000599716 TRIM62Q9BVG3 475 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 WDCPQ9H6R7 721 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 SYNCQ9H7C4 482 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 SIX2Q9NPC8 291 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 ARHGEF38Q9NXL2 777 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 SEPT3Q9UH03 358 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 IPO11Q9UI26 975 aaKnown RBP8.81□□□□□ -1
SHKBP1-220ENST00000599716 TPX2Q9ULW0 747 aaKnown RBP8.81□□□□□ -1
SHKBP1-220ENST00000599716 FADS3Q9Y5Q0 445 aa8.81□□□□□ -1
SHKBP1-220ENST00000599716 SPTY2D1-AS1A0A0U1RR47 76 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 DRGXA6NNA5 263 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 FOXN3O00409 490 aaPredicted RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 AQP9O43315 295 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 GJB6O95452 261 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 CD160O95971 181 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 CSF2P04141 144 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 PRNPP04156 253 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 GLI1P08151 1106 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 NME1P15531 152 aaKnown RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 POU3F2P20265 443 aaPredicted RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 PON1P27169 355 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 RECQLP46063 649 aaPredicted RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 CXCR3P49682 368 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 SERPINH1P50454 418 aaKnown RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 VASPP50552 380 aaPredicted RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 ADKP55263 362 aaKnown RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 MARSP56192 900 aaKnown RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 HNRNPKP61978 463 aaKnown RBP eCLIP8.8□□□□□ -1
SHKBP1-220ENST00000599716 DEUP1Q05D60 604 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 VAC14Q08AM6 782 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms