RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 TPCN2Q8NHX9 752 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 HCAR2Q8TDS4 363 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 RXFP2Q8WXD0 754 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 FGF11Q92914 225 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 TBC1D31Q96DN5 1066 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 BMFQ96LC9 184 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 UBL7Q96S82 380 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-211ENST00000597968 SALL4Q9UJQ4 1053 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 MFHAS1Q9Y4C4 1052 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 ATRXP46100 2492 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 APC2O95996 2303 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 KDELR3O43731 214 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 SDC3O75056 442 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 DXOO77932 396 aaKnown RBP13.84□□□□□ -0.19
TRIM28-211ENST00000597968 GFPT2O94808 682 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 CD160O95971 181 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 PAK4O96013 591 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-211ENST00000597968 MT-CO3P00414 261 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 CCDC172P0C7W6 258 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 GIMD1P0DJR0 217 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 KRT3P12035 628 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 HOXB3P14651 431 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-211ENST00000597968 DESP17661 470 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 NSFP46459 744 aaKnown RBP13.84□□□□□ -0.19
TRIM28-211ENST00000597968 YBEYP58557 167 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-211ENST00000597968 YPEL5P62699 121 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 GRM3Q14832 879 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 CDCP2Q5VXM1 449 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 SEL1L3Q68CR1 1132 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 ZCCHC8Q6NZY4 707 aaKnown RBP13.84□□□□□ -0.19
TRIM28-211ENST00000597968 PHF13Q86YI8 300 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-211ENST00000597968 MARCH9Q86YJ5 346 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 DRC7Q8IY82 874 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 WDR48Q8TAF3 677 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 ZNF578Q96N58 590 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-211ENST00000597968 DEPDC7Q96QD5 511 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 C1QTNF7Q9BXJ2 289 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 TMPRSS4Q9NRS4 437 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 DKK3Q9UBP4 350 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 SNX10Q9Y5X0 201 aa13.84□□□□□ -0.19
TRIM28-211ENST00000597968 DOCK4Q8N1I0 1966 aa13.83□□□□□ -0.19
TRIM28-211ENST00000597968 KNTC1P50748 2209 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 URB1O60287 2271 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 ANKRD62A6NC57 917 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 LRRC10BA6NIK2 292 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 SIGLEC16A6NMB1 481 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 EIF4E1BA6NMX2 242 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 C16orf96A6NNT2 1141 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 EIF3CLB5ME19 914 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 AREL1O15033 823 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 LRIG2O94898 1065 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 PLEKP08567 350 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 DNA2P51530 1060 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 PFN3P60673 137 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 POLR2FP61218 127 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 KRT31Q15323 416 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 SYCP1Q15431 976 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 C2CD6Q53TS8 623 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 RWDD4Q6NW29 188 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 IGF2-ASQ6U949 168 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 RBM43Q6ZSC3 357 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 PARS2Q7L3T8 475 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 PTAR1Q7Z6K3 402 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 EMC1Q8N766 993 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 GPT2Q8TD30 523 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 APOLD1Q96LR9 279 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 KLF6Q99612 283 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 EIF3CQ99613 913 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 SELENOOQ9BVL4 669 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 ZDHHC6Q9H6R6 413 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 DNAJC28Q9NX36 388 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 ADAM22Q9P0K1 906 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 IPO11Q9UI26 975 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 CA5BQ9Y2D0 317 aa13.83□□□□□ -0.2
TRIM28-211ENST00000597968 FCF1Q9Y324 198 aaKnown RBP13.83□□□□□ -0.2
TRIM28-211ENST00000597968 POM121BA6NF01 834 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 WASH4PA8MWX3 477 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 K7ESM1 405 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 NEMP1O14524 444 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 OPA1O60313 960 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 CHRNB2P17787 502 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 GPD1P21695 349 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 HDAC4P56524 1084 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 CLDN2P57739 230 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 ERVPABLB-1P60509 514 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 SEMG2Q02383 582 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 C1QBPQ07021 282 aaKnown RBP13.82□□□□□ -0.2
TRIM28-211ENST00000597968 PTP4A2Q12974 167 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 MAPK8IP2Q13387 824 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-211ENST00000597968 FZD2Q14332 565 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 CDO1Q16878 200 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 C15orf59Q2T9L4 293 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-211ENST00000597968 MYLK3Q32MK0 819 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 TBC1D25Q3MII6 688 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 PARP15Q460N3 678 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 SLFN11Q7Z7L1 901 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 SDR16C5Q8N3Y7 309 aa13.82□□□□□ -0.2
TRIM28-211ENST00000597968 RTL3Q8N8U3 475 aaKnown RBP13.82□□□□□ -0.2
TRIM28-211ENST00000597968 ZNF548Q8NEK5 533 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-211ENST00000597968 FAM172AQ8WUF8 416 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms