RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CCDC50Q8IVM0 306 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 LRRC8AQ8IWT6 810 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 TBC1D3Q8IZP1 549 aaPredicted RBP11.27□□□□□ -0.61
LIG1-211ENST00000596457 TXLNBQ8N3L3 684 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 ATPAF2Q8N5M1 289 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 FAM71BQ8TC56 605 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 LRRN4Q8WUT4 740 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 ANP32BQ92688 251 aaKnown RBP11.27□□□□□ -0.61
LIG1-211ENST00000596457 ARRDC3Q96B67 414 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 ZNF670Q9BS34 389 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 RTKNQ9BST9 563 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 CINPQ9BW66 212 aaPredicted RBP11.27□□□□□ -0.61
LIG1-211ENST00000596457 RCOR3Q9P2K3 495 aaPredicted RBP11.27□□□□□ -0.61
LIG1-211ENST00000596457 IPO11Q9UI26 975 aaKnown RBP11.27□□□□□ -0.61
LIG1-211ENST00000596457 PPM1HQ9ULR3 514 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 BCLAF3A2AJT9 711 aaKnown RBP11.26□□□□□ -0.61
LIG1-211ENST00000596457 INSIG1O15503 277 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 PJA2O43164 708 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 NRDCO43847 1150 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 MFSD11O43934 449 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 GSRP00390 522 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 PTMAP06454 111 aaKnown RBP11.26□□□□□ -0.61
LIG1-211ENST00000596457 DYNLT1P63172 113 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 RAD51Q06609 339 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 SF3A2Q15428 464 aaKnown RBP11.26□□□□□ -0.61
LIG1-211ENST00000596457 RSPO4Q2I0M5 234 aaPredicted RBP11.26□□□□□ -0.61
LIG1-211ENST00000596457 MYLK3Q32MK0 819 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 INO80DQ53TQ3 878 aaPredicted RBP11.26□□□□□ -0.61
LIG1-211ENST00000596457 SYCP2LQ5T4T6 812 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 C11orf63Q6NUN7 778 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 MFSD7Q6UXD7 560 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 USP30Q70CQ3 517 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 PAF1Q8N7H5 531 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 CCDC112Q8NEF3 446 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 TMIEQ8NEW7 156 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 OR2AP1Q8NGE2 309 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 KIAA1524Q8TCG1 905 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 NETO1Q8TDF5 533 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 NSMCE1Q8WV22 266 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 CASKIN2Q8WXE0 1202 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 FOXJ1Q92949 421 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 ISG20Q96AZ6 181 aaKnown RBP11.26□□□□□ -0.61
LIG1-211ENST00000596457 GDAP1L1Q96MZ0 367 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 RNF157Q96PX1 679 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 PDFQ9HBH1 243 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 SGK2Q9HBY8 427 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 PARD6AQ9NPB6 346 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 SEMA4GQ9NTN9 838 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 TMEM74BQ9NUR3 256 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 LHX3Q9UBR4 397 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 CDV3Q9UKY7 258 aaKnown RBP11.26□□□□□ -0.61
LIG1-211ENST00000596457 GUCA1BQ9UMX6 200 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 HEY1Q9Y5J3 304 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 WASF2Q9Y6W5 498 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 ANKRD36A6QL64 1941 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 ADAMTS9Q9P2N4 1935 aa11.26□□□□□ -0.61
LIG1-211ENST00000596457 TTC24A2A3L6 582 aaPredicted RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 LRRC72A6NJI9 287 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 C3orf70A6NLC5 250 aaPredicted RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 METTL12A8MUP2 240 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 BTNL10A8MVZ5 291 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 PATE3B3GLJ2 98 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 APOL1O14791 398 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 ARHGAP6O43182 974 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 PSTPIP1O43586 416 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 NEBLO76041 1014 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 POP4O95707 220 aaKnown RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 IGLV3-19P01714 112 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 CFIP05156 583 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 UGT2B4P06133 528 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 ZNF806P0C7X5 589 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 KRT10P13645 584 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 DRD3P35462 400 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 MARCKSL1P49006 195 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 ITKQ08881 620 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 ZNF235Q14590 738 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 LBRQ14739 615 aaKnown RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 PAFAH1B3Q15102 231 aaKnown RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 IFI16Q16666 785 aaKnown RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 SPDYCQ5MJ68 293 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 WDR45BQ5MNZ6 344 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 LRRC38Q5VT99 294 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 TCEAL6Q6IPX3 200 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 FBXL19Q6PCT2 694 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 NCEH1Q6PIU2 408 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 NPNTQ6UXI9 565 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 PRR23CQ6ZRP0 262 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.25□□□□□ -0.61
LIG1-211ENST00000596457 PQLC3Q8N755 202 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 C12orf50Q8NA57 414 aaPredicted RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 TSEN2Q8NCE0 465 aaKnown RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 CCNYQ8ND76 341 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 TCEAL3Q969E4 200 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 ZNF419Q96HQ0 510 aaPredicted RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 PPP1R16AQ96I34 528 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 KLHL32Q96NJ5 620 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 EIF2B4Q9UI10 523 aaKnown RBP11.25□□□□□ -0.61
LIG1-211ENST00000596457 AMFRQ9UKV5 643 aa11.25□□□□□ -0.61
LIG1-211ENST00000596457 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.25□□□□□ -0.61
LIG1-211ENST00000596457 ADGRG1Q9Y653 693 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms