RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PPP1R15BQ5SWA1 713 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 C6orf118Q5T5N4 469 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 ACBD5Q5T8D3 534 aaPredicted RBP12.74□□□□□ -0.37
UPF1-203ENST00000594504 SEL1L3Q68CR1 1132 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 PLEKHA7Q6IQ23 1121 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 WDR59Q6PJI9 974 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 LRRC31Q6UY01 552 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 DPY19L3Q6ZPD9 716 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 STRADAQ7RTN6 431 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 OXR1Q8N573 874 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 TMEM145Q8NBT3 493 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 TMIEQ8NEW7 156 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 OR13H1Q8NG92 308 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 GRIN3AQ8TCU5 1115 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 MCEEQ96PE7 176 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 C2orf49Q9BVC5 232 aaPredicted RBP12.74□□□□□ -0.37
UPF1-203ENST00000594504 CALN1Q9BXU9 219 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 PREBQ9HCU5 417 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 FARP1Q9Y4F1 1045 aaPredicted RBP12.74□□□□□ -0.37
UPF1-203ENST00000594504 DOCK4Q8N1I0 1966 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 A0A087X0T9 212 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 SSU72P8A0A1W2PR75 194 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 FFAR2O15552 330 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 MAGEC1O60732 1142 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 LEFTY1O75610 366 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 FAM228BP0C875 321 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 DESP17661 470 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 DGKAP23743 735 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 EIF4A3P38919 411 aaKnown RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 EIF2S3P41091 472 aaKnown RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 DNA2P51530 1060 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 ZNF143P52747 638 aaPredicted RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 RPL7AP62424 266 aaKnown RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 INSM1Q01101 510 aaPredicted RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 MAPK8IP2Q13387 824 aaPredicted RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 MAMLD1Q13495 774 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 FGL2Q14314 439 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 C15orf59Q2T9L4 293 aaPredicted RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 PROX2Q3B8N5 592 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 C22orf39Q6P5X5 142 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 ALKBH5Q6P6C2 394 aaKnown RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 DCUN1D2Q6PH85 259 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 KDM7AQ6ZMT4 941 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 ERN2Q76MJ5 926 aaKnown RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 SETD3Q86TU7 594 aaPredicted RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 HORMAD1Q86X24 394 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 FAM131BQ86XD5 332 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 DCAF4L2Q8NA75 395 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 CENPIQ92674 756 aaPredicted RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 ZNF653Q96CK0 615 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 C1orf74Q96LT6 269 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 DYRK4Q9NR20 520 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 ZNF212Q9UDV6 495 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 CNOT8Q9UFF9 292 aaKnown RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 IL36AQ9UHA7 158 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 FCF1Q9Y324 198 aaKnown RBP12.73□□□□□ -0.37
UPF1-203ENST00000594504 RAI2Q9Y5P3 530 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 SCINQ9Y6U3 715 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 WASF2Q9Y6W5 498 aa12.73□□□□□ -0.37
UPF1-203ENST00000594504 URB1O60287 2271 aaKnown RBP12.72□□□□□ -0.37
UPF1-203ENST00000594504 ARID1BQ8NFD5 2236 aaPredicted RBP12.72□□□□□ -0.37
UPF1-203ENST00000594504 IGLV3-10A0A075B6K4 115 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 ATMINO43313 823 aaPredicted RBP12.72□□□□□ -0.37
UPF1-203ENST00000594504 ZMPSTE24O75844 475 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 CD160O95971 181 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 PAK4O96013 591 aaPredicted RBP12.72□□□□□ -0.37
UPF1-203ENST00000594504 PRNPP04156 253 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 GIMD1P0DJR0 217 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 CDK4P11802 303 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 ACP1P24666 158 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 GKP32189 559 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 NUDT1P36639 197 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 ACVRL1P37023 503 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 ARF5P84085 180 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 OVGP1Q12889 678 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 SLC18A3Q16572 532 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 CDO1Q16878 200 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 CCDC122Q5T0U0 273 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 GCNT7Q6ZNI0 430 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 Q6ZSR6 202 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 DNAAF5Q86Y56 855 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 SLC22A18ASQ8N1D0 253 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 FAM172AQ8WUF8 416 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 NXPE2Q96DL1 559 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 BMFQ96LC9 184 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 CCDC114Q96M63 670 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 CNPY3Q9BT09 278 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 DEF6Q9H4E7 631 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 ATP13A1Q9HD20 1204 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 MRPL47Q9HD33 250 aaKnown RBP12.72□□□□□ -0.37
UPF1-203ENST00000594504 NDFIP2Q9NV92 336 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 KLHL11Q9NVR0 708 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 CACNA1GO43497 2377 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 SHROOM3Q8TF72 1996 aa12.72□□□□□ -0.37
UPF1-203ENST00000594504 ILVBLA1L0T0 632 aa12.71□□□□□ -0.37
UPF1-203ENST00000594504 RAD51BO15315 384 aa12.71□□□□□ -0.37
UPF1-203ENST00000594504 CCP110O43303 1012 aa12.71□□□□□ -0.37
UPF1-203ENST00000594504 PIAS2O75928 621 aa12.71□□□□□ -0.37
UPF1-203ENST00000594504 MT-CO3P00414 261 aa12.71□□□□□ -0.37
UPF1-203ENST00000594504 HNRNPA2B1P22626 353 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms