RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 PEX11BO96011 259 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 ITGB7P26010 798 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 MAGEA1P43355 309 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 CCR5P51681 352 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 RHOAP61586 193 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 GRIK2Q13002 908 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 HADHQ16836 314 aaKnown RBP20.43■□□□□ 0.86
SS18-218ENST00000581021 MYLK3Q32MK0 819 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 TMCO3Q6UWJ1 677 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 ERN2Q76MJ5 926 aaKnown RBP20.43■□□□□ 0.86
SS18-218ENST00000581021 RABEPKQ7Z6M1 372 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 RHOT2Q8IXI1 618 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 CCDC170Q8IYT3 715 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 PCDH19Q8TAB3 1148 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 CASKIN2Q8WXE0 1202 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 RAPGEF5Q92565 580 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 GDAP1L1Q96MZ0 367 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 SLC6A18Q96N87 628 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 HDAC8Q9BY41 377 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 GOLPH3Q9H4A6 298 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 TMEM9BQ9NQ34 198 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 DONSONQ9NYP3 566 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 RCOR3Q9P2K3 495 aaPredicted RBP20.43■□□□□ 0.86
SS18-218ENST00000581021 IPO11Q9UI26 975 aaKnown RBP20.43■□□□□ 0.86
SS18-218ENST00000581021 PCDHA13Q9Y5I0 950 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 A0A1W2PPC4 97 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 ARHGAP33O14559 1287 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 MUSKO15146 869 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 MFSD11O43934 449 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 UGT2B4P06133 528 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 GNSP15586 552 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 CDC25BP30305 580 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 ABL2P42684 1182 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 CSNK1EP49674 416 aaKnown RBP20.42■□□□□ 0.86
SS18-218ENST00000581021 SNRPD1P62314 119 aaKnown RBP20.42■□□□□ 0.86
SS18-218ENST00000581021 PUM1Q14671 1186 aaKnown RBP eCLIP20.42■□□□□ 0.86
SS18-218ENST00000581021 PQLC3Q8N755 202 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 SPC24Q8NBT2 197 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 FAF2Q96CS3 445 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 NSMCE3Q96MG7 304 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 GTPBP2Q9BX10 602 aaKnown RBP20.42■□□□□ 0.86
SS18-218ENST00000581021 CALN1Q9BXU9 219 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 SALL4Q9UJQ4 1053 aa20.42■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3DA0A087WVF3 549 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3IA0A087WXS9 549 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3EA0A087X179 549 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3KA0A087X1G2 549 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 A0A1B0GVT2 93 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3FA6NER0 549 aaPredicted RBP20.41■□□□□ 0.86
SS18-218ENST00000581021 C3orf70A6NLC5 250 aaPredicted RBP20.41■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3LB9A6J9 549 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 NDUFA10O95299 355 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 WNT1P04628 370 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3HP0C7X1 549 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 ADRB3P13945 408 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 MAT2AP31153 395 aaKnown RBP20.41■□□□□ 0.86
SS18-218ENST00000581021 ARHGAP25P42331 645 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 ANKRD20A8PQ5CZ79 823 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 NCBP2-AS2Q69YL0 99 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3GQ6DHY5 549 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3CQ6IPX1 549 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 TBC1D3Q8IZP1 549 aaPredicted RBP20.41■□□□□ 0.86
SS18-218ENST00000581021 LZTR1Q8N653 840 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 TSEN2Q8NCE0 465 aaKnown RBP20.41■□□□□ 0.86
SS18-218ENST00000581021 ZNF670Q9BS34 389 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 RTKNQ9BST9 563 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 SP110Q9HB58 689 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 LCMT1Q9UIC8 334 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 GGT7Q9UJ14 662 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 EPN1Q9Y6I3 576 aaPredicted RBP20.41■□□□□ 0.86
SS18-218ENST00000581021 KNL1Q8NG31 2342 aa20.41■□□□□ 0.86
SS18-218ENST00000581021 CNOT1A5YKK6 2376 aaKnown RBP20.4■□□□□ 0.86
SS18-218ENST00000581021 C16orf96A6NNT2 1141 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 BUB1BO60566 1050 aaPredicted RBP20.4■□□□□ 0.86
SS18-218ENST00000581021 PIGNO95427 931 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 POP4O95707 220 aaKnown RBP20.4■□□□□ 0.86
SS18-218ENST00000581021 IGSF6O95976 241 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 KRT7P08729 469 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 AFF3P51826 1226 aaKnown RBP20.4■□□□□ 0.86
SS18-218ENST00000581021 NEK3P51956 506 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 HADHBP55084 474 aaKnown RBP20.4■□□□□ 0.86
SS18-218ENST00000581021 IL10RBQ08334 325 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 SLC10A7Q0GE19 358 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 LRRC73Q5JTD7 316 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 TRIM69Q86WT6 500 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 TMTC1Q8IUR5 882 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 ASCC3Q8N3C0 2202 aaKnown RBP20.4■□□□□ 0.86
SS18-218ENST00000581021 MINDY1Q8N5J2 469 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 KCTD6Q8NC69 237 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 PPP1R16AQ96I34 528 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 KLHL32Q96NJ5 620 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 KDM4CQ9H3R0 1056 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 IL21RQ9HBE5 538 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 PREBQ9HCU5 417 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 ZFR2Q9UPR6 939 aaKnown RBP20.4■□□□□ 0.86
SS18-218ENST00000581021 ITM2BQ9Y287 266 aa20.4■□□□□ 0.86
SS18-218ENST00000581021 DOCK9Q9BZ29 2069 aa20.39■□□□□ 0.86
SS18-218ENST00000581021 A0A1W2PQU0 124 aa20.39■□□□□ 0.85
SS18-218ENST00000581021 MAFKO60675 156 aa20.39■□□□□ 0.85
SS18-218ENST00000581021 RNGTTO60942 597 aaKnown RBP20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms