RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 KIF1CO43896 1103 aaKnown RBP5.57□□□□□ -1.52
NUP88-213ENST00000576862 MMP3P08254 477 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 CTPS1P17812 591 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 DCTDP32321 178 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 CENPAP49450 140 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 NAA25Q14CX7 972 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 FNBP1LQ5T0N5 605 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 ATG9BQ674R7 924 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 TRILQ7L0X0 811 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 PRSS45Q7RTY3 260 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.57□□□□□ -1.52
NUP88-213ENST00000576862 MCPH1Q8NEM0 835 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 DNAAF1Q8NEP3 725 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 RASSF8Q8NHQ8 419 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 RFWD2Q8NHY2 731 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 TMEM170AQ8WVE7 144 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 RUFY2Q8WXA3 655 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 USP13Q92995 863 aaPredicted RBP5.57□□□□□ -1.52
NUP88-213ENST00000576862 TMEM18Q96B42 140 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 LYZL4Q96KX0 146 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 EYA3Q99504 573 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 SF3B5Q9BWJ5 86 aaKnown RBP5.57□□□□□ -1.52
NUP88-213ENST00000576862 DCLK3Q9C098 648 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 NPFFR1Q9GZQ6 430 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 SLC32A1Q9H598 525 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 ALKBH4Q9NXW9 302 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 PLK2Q9NYY3 685 aa5.57□□□□□ -1.52
NUP88-213ENST00000576862 WIZO95785 1651 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 ADGRF5Q8IZF2 1346 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 A0A096LPK6 155 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 C17orf113A0A1B0GUU1 675 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 RRN3P2A6NIE6 340 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 LIASO43766 372 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 SLC25A17O43808 307 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 CEP104O60308 925 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 SOX30O94993 753 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 CDC25AP30304 524 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 TTKP33981 857 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 CDKN2AP42771 156 aaKnown RBP5.56□□□□□ -1.52
NUP88-213ENST00000576862 MAPK9P45984 424 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 GPR12P47775 334 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 TLE2Q04725 743 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 DNTTIP2Q5QJE6 756 aaKnown RBP5.56□□□□□ -1.52
NUP88-213ENST00000576862 OTUD1Q5VV17 481 aaPredicted RBP5.56□□□□□ -1.52
NUP88-213ENST00000576862 IL20RBQ6UXL0 311 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 MON1AQ86VX9 555 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 CPXM2Q8N436 756 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 GPT2Q8TD30 523 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 MARK4Q96L34 752 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 MSTO1Q9BUK6 570 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 GPR63Q9BZJ6 419 aa5.56□□□□□ -1.52
NUP88-213ENST00000576862 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.55□□□□□ -1.52
NUP88-213ENST00000576862 CLEC18AA5D8T8 446 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 PABPN1LA6NDY0 278 aaKnown RBP5.55□□□□□ -1.52
NUP88-213ENST00000576862 CBY3A6NI87 242 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 OR6C75A6NL08 312 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 ZNF667Q5HYK9 610 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 ADGRG6Q86SQ4 1221 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 SMAP1Q8IYB5 467 aaPredicted RBP5.55□□□□□ -1.52
NUP88-213ENST00000576862 NEXN-AS1Q8NBZ9 246 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 CLEC18CQ8NCF0 446 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 ZMIZ2Q8NF64 920 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 ADAMTS14Q8WXS8 1223 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 ZNF479Q96JC4 524 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 TTYH1Q9H313 450 aaPredicted RBP5.55□□□□□ -1.52
NUP88-213ENST00000576862 HIF1ANQ9NWT6 349 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 FZD10Q9ULW2 581 aa5.55□□□□□ -1.52
NUP88-213ENST00000576862 TOP2AP11388 1531 aaKnown RBP5.54□□□□□ -1.52
NUP88-213ENST00000576862 ATAD2BQ9ULI0 1458 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 EYA2O00167 538 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 PYGLP06737 847 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 HOXD3P31249 432 aaPredicted RBP5.54□□□□□ -1.52
NUP88-213ENST00000576862 CCKARP32238 428 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 PSMC2P35998 433 aaKnown RBP5.54□□□□□ -1.52
NUP88-213ENST00000576862 PGM1P36871 562 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 CXCR3P49682 368 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 BLKP51451 505 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 TDGQ13569 410 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 SLC4A8Q2Y0W8 1093 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 FSCBQ5H9T9 825 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 NCAPH2Q6IBW4 605 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 MOB3CQ70IA8 216 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 LRRC8DQ7L1W4 858 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 CHD1LQ86WJ1 897 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 TMTC1Q8IUR5 882 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 FBXL14Q8N1E6 418 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 GDPD5Q8WTR4 605 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 GFM1Q96RP9 751 aaKnown RBP5.54□□□□□ -1.52
NUP88-213ENST00000576862 GJD2Q9UKL4 321 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 MYO6Q9UM54 1294 aa5.54□□□□□ -1.52
NUP88-213ENST00000576862 LRRFIP2Q9Y608 721 aaKnown RBP5.54□□□□□ -1.52
NUP88-213ENST00000576862 VWA5AO00534 786 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 EBAG9O00559 213 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 HOXC11O43248 304 aaPredicted RBP5.53□□□□□ -1.52
NUP88-213ENST00000576862 HOXC6P09630 235 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 MLH1P40692 756 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 FAM27E3Q08E93 113 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 CAPSQ13938 189 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 MYBPC2Q14324 1141 aa5.53□□□□□ -1.52
NUP88-213ENST00000576862 LPIN1Q14693 890 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms