RNA–Protein interactions for RNA: ENST00000575599.5

RPAIN-216, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-216ENST00000575599 ARRDC3Q96B67 414 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 CSPG4P5Q96PW8 444 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 HEPHQ9BQS7 1158 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 GTPBP2Q9BX10 602 aaKnown RBP13.48□□□□□ -0.25
RPAIN-216ENST00000575599 CAPN10Q9HC96 672 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 PCDH18Q9HCL0 1135 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 TMEM9BQ9NQ34 198 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 UBA2Q9UBT2 640 aaPredicted RBP13.48□□□□□ -0.25
RPAIN-216ENST00000575599 PPP2R2CQ9Y2T4 447 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 ADGRG1Q9Y653 693 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 SLCO1B1Q9Y6L6 691 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 WASF2Q9Y6W5 498 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 ADAMTS9Q9P2N4 1935 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 WDR87Q6ZQQ6 2873 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 PI4KAP42356 2102 aa13.48□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3DA0A087WVF3 549 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3IA0A087WXS9 549 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3EA0A087X179 549 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3KA0A087X1G2 549 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 A0A1B0GTW7 788 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3FA6NER0 549 aaPredicted RBP13.47□□□□□ -0.25
RPAIN-216ENST00000575599 C4orf47A7E2U8 309 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3LB9A6J9 549 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 J3KR12 359 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 KRIT1O00522 736 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 SLC30A4O14863 429 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 SLC7A4O43246 635 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 PLRG1O43660 514 aaKnown RBP13.47□□□□□ -0.25
RPAIN-216ENST00000575599 LCA5LO95447 670 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 GSRP00390 522 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 IGHV4-34P06331 123 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3HP0C7X1 549 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 GKP32189 559 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 LIMK1P53667 647 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 ATXN3P54252 364 aaPredicted RBP13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TAS2R40P59535 323 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 RHOAP61586 193 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 SNRPD1P62314 119 aaKnown RBP13.47□□□□□ -0.25
RPAIN-216ENST00000575599 PPP2CBP62714 309 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 PPP2CAP67775 309 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 KIF5AQ12840 1032 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3GQ6DHY5 549 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3CQ6IPX1 549 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TMCO3Q6UWJ1 677 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 ARHGAP12Q8IWW6 846 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 RHOT2Q8IXI1 618 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TBC1D3Q8IZP1 549 aaPredicted RBP13.47□□□□□ -0.25
RPAIN-216ENST00000575599 OR2AP1Q8NGE2 309 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 CASKIN2Q8WXE0 1202 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 RFFLQ8WZ73 363 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 PPP1R16AQ96I34 528 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 EXOC2Q96KP1 924 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 GDAP1L1Q96MZ0 367 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 RTKNQ9BST9 563 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TSGA10Q9BZW7 698 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 SP110Q9HB58 689 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 TRMT1Q9NXH9 659 aaKnown RBP13.47□□□□□ -0.25
RPAIN-216ENST00000575599 DLL3Q9NYJ7 618 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 LCMT1Q9UIC8 334 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 BOLA1Q9Y3E2 137 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 DNAH14Q0VDD8 3507 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 DCHS1Q96JQ0 3298 aa13.47□□□□□ -0.25
RPAIN-216ENST00000575599 DCDC2BA2VCK2 349 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 KRT86O43790 486 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 PRAMEF11O60813 436 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 IGSF6O95976 241 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 CD48P09326 243 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 CD27P26842 260 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 MAN1A1P33908 653 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 VAV2P52735 878 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 UAP1L1Q3KQV9 507 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 ATP13A4Q4VNC1 1196 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 PIP5KL1Q5T9C9 394 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 AFMIDQ63HM1 303 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 LAYNQ6UX15 382 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 ARHGAP36Q6ZRI8 547 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 TP53INP2Q8IXH6 220 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 KCTD6Q8NC69 237 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 OR2I1PQ8NGU4 316 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 KIAA1524Q8TCG1 905 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 FAM131CQ96AQ9 280 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 CALN1Q9BXU9 219 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 PDFQ9HBH1 243 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 ETNK2Q9NVF9 386 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 INTUQ9ULD6 942 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 PCDH15Q96QU1 1955 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 CEP250Q9BV73 2442 aa13.46□□□□□ -0.25
RPAIN-216ENST00000575599 PLXNA2O75051 1894 aa13.46□□□□□ -0.26
RPAIN-216ENST00000575599 ARHGAP33O14559 1287 aa13.45□□□□□ -0.26
RPAIN-216ENST00000575599 CDX4O14627 284 aaPredicted RBP13.45□□□□□ -0.26
RPAIN-216ENST00000575599 UGT2B4P06133 528 aa13.45□□□□□ -0.26
RPAIN-216ENST00000575599 SYPP08247 313 aa13.45□□□□□ -0.26
RPAIN-216ENST00000575599 KRT7P08729 469 aa13.45□□□□□ -0.26
RPAIN-216ENST00000575599 ITGB7P26010 798 aa13.45□□□□□ -0.26
RPAIN-216ENST00000575599 MAT2AP31153 395 aaKnown RBP13.45□□□□□ -0.26
RPAIN-216ENST00000575599 NEK3P51956 506 aa13.45□□□□□ -0.26
RPAIN-216ENST00000575599 NAP1L1P55209 391 aaKnown RBP13.45□□□□□ -0.26
RPAIN-216ENST00000575599 CCDC15Q0P6D6 951 aa13.45□□□□□ -0.26
RPAIN-216ENST00000575599 GRIK2Q13002 908 aa13.45□□□□□ -0.26
RPAIN-216ENST00000575599 DPYSL3Q14195 570 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms