RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 TLR4O00206 839 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 KRIT1O00522 736 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 SLC31A1O15431 190 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 PRPSAP2O60256 369 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 PCDH8O95206 1070 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 GSRP00390 522 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 ADRB3P13945 408 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 TCF4P15884 667 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 PRLRP16471 622 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 IL1R2P27930 398 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 SNRPD1P62314 119 aaKnown RBP18.68■□□□□ 0.58
CLN3-237ENST00000569030 SHBQ15464 509 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 NFKBIBQ15653 356 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 SETMARQ53H47 684 aaPredicted RBP18.68■□□□□ 0.58
CLN3-237ENST00000569030 PARS2Q7L3T8 475 aaKnown RBP18.68■□□□□ 0.58
CLN3-237ENST00000569030 VPS36Q86VN1 386 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 HORMAD1Q86X24 394 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 SPATS2Q86XZ4 545 aaKnown RBP18.68■□□□□ 0.58
CLN3-237ENST00000569030 MFSD2AQ8NA29 543 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 BAHD1Q8TBE0 780 aaPredicted RBP18.68■□□□□ 0.58
CLN3-237ENST00000569030 RHBDD1Q8TEB9 315 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 SKA1Q96BD8 255 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 CELF6Q96J87 481 aaKnown RBP18.68■□□□□ 0.58
CLN3-237ENST00000569030 BTBD6Q96KE9 485 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 DMTF1Q9Y222 760 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 SHROOM3Q8TF72 1996 aa18.68■□□□□ 0.58
CLN3-237ENST00000569030 A0A1B0GTQ1 180 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 C16orf96A6NNT2 1141 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 EIF3CLB5ME19 914 aaKnown RBP18.67■□□□□ 0.58
CLN3-237ENST00000569030 PRAMEF26H0Y7S4 382 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 J3KR12 359 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 PCDHGA12O60330 932 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 POP4O95707 220 aaKnown RBP18.67■□□□□ 0.58
CLN3-237ENST00000569030 NUDT1P36639 197 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 CCT8P50990 548 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 NEK3P51956 506 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 NXPH1P58417 271 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 SUZ12Q15022 739 aaKnown RBP18.67■□□□□ 0.58
CLN3-237ENST00000569030 CYTH1Q15438 398 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 INO80DQ53TQ3 878 aaPredicted RBP18.67■□□□□ 0.58
CLN3-237ENST00000569030 PPP6R3Q5H9R7 873 aaPredicted RBP18.67■□□□□ 0.58
CLN3-237ENST00000569030 SEL1L3Q68CR1 1132 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 ALKBH5Q6P6C2 394 aaKnown RBP18.67■□□□□ 0.58
CLN3-237ENST00000569030 FBXL19Q6PCT2 694 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 RFX8Q6ZV50 586 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 ARHGEF26Q96DR7 871 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 ELF4Q99607 663 aaPredicted RBP18.67■□□□□ 0.58
CLN3-237ENST00000569030 EIF3CQ99613 913 aaKnown RBP18.67■□□□□ 0.58
CLN3-237ENST00000569030 MYOCQ99972 504 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 SLC39A8Q9C0K1 460 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 TSPY26PQ9H489 355 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 CWC15Q9P013 229 aaKnown RBP18.67■□□□□ 0.58
CLN3-237ENST00000569030 NENFQ9UMX5 172 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLN3-237ENST00000569030 FADS3Q9Y5Q0 445 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 CACNA1BQ00975 2339 aa18.67■□□□□ 0.58
CLN3-237ENST00000569030 WDFY3Q8IZQ1 3526 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 FLRT2O43155 660 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 HYAL3O43820 417 aaPredicted RBP18.66■□□□□ 0.58
CLN3-237ENST00000569030 DFNA5O60443 496 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 CYP1A2P05177 515 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 UGT2B4P06133 528 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 ERCC2P18074 760 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 HNRNPH3P31942 346 aaKnown RBP18.66■□□□□ 0.58
CLN3-237ENST00000569030 PCK1P35558 622 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 NDST2P52849 883 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 STAT4Q14765 748 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 TMEM259Q4ZIN3 620 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 SLC45A4Q5BKX6 768 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 ZNF805Q5CZA5 627 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 GLRX5Q86SX6 157 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 SLCO6A1Q86UG4 719 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 IQCHQ86VS3 1027 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 PSTKQ8IV42 348 aaKnown RBP18.66■□□□□ 0.58
CLN3-237ENST00000569030 PNPLA1Q8N8W4 532 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 TMEM145Q8NBT3 493 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 CASKIN2Q8WXE0 1202 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 LRIG1Q96JA1 1093 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 SCNM1Q9BWG6 230 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 PDFQ9HBH1 243 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 FZD3Q9NPG1 666 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 GDF3Q9NR23 364 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 LHX3Q9UBR4 397 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 PLXNB3Q9ULL4 1909 aa18.66■□□□□ 0.58
CLN3-237ENST00000569030 INSIG1O15503 277 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 DAPK3O43293 454 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 PRAMEF11O60813 436 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 TPM3P06753 285 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 FTH1P19P0C7X4 201 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 EIF4A3P38919 411 aaKnown RBP18.65■□□□□ 0.58
CLN3-237ENST00000569030 ABL2P42684 1182 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 HCAR3P49019 387 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 PAPOLAP51003 745 aaKnown RBP18.65■□□□□ 0.58
CLN3-237ENST00000569030 RHOAP61586 193 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 FGL2Q14314 439 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 ACAP1Q15027 740 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 SMTNL2Q2TAL5 461 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 CCDC122Q5T0U0 273 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 AFMIDQ63HM1 303 aa18.65■□□□□ 0.58
CLN3-237ENST00000569030 TXNRD3NBQ6F5E7 133 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms