RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 MYRFQ9Y2G1 1151 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 NME7Q9Y5B8 376 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 CROCCQ5TZA2 2017 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 IGKV6-21A0A0C4DH24 114 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 YJEFN3A6XGL0 299 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 AHSGP02765 367 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 NAB1Q13506 487 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 ZNF423Q2M1K9 1284 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 C9orf57Q5W0N0 161 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 STRADAQ7RTN6 431 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 ATPAF2Q8N5M1 289 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 PPHLN1Q8NEY8 458 aaKnown RBP14.66□□□□□ -0.06
VPS35-210ENST00000568784 ERLEC1Q96DZ1 483 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 FBRSL1Q9HCM7 1045 aaKnown RBP14.66□□□□□ -0.06
VPS35-210ENST00000568784 ADAM28Q9UKQ2 775 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 UBQLN1Q9UMX0 589 aaKnown RBP14.66□□□□□ -0.06
VPS35-210ENST00000568784 ADAMTS5Q9UNA0 930 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 VILLO15195 856 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 NOL3O60936 208 aaKnown RBP14.66□□□□□ -0.06
VPS35-210ENST00000568784 APOA4P06727 396 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 SMIM18P0DKX4 95 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 DPP6P42658 865 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 TBCELQ5QJ74 424 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 C12orf42Q96LP6 360 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 ZNF560Q96MR9 790 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 DRC3Q9H069 523 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 TRPC5OSA6NMA1 111 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 NRP1O14786 923 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 YWHAQP27348 245 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 ZYG11AQ6WRX3 759 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 HASPINQ8TF76 798 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 PABPC5Q96DU9 382 aaKnown RBP14.66□□□□□ -0.06
VPS35-210ENST00000568784 HAPLN3Q96S86 360 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 RSL24D1Q9UHA3 163 aaKnown RBP14.66□□□□□ -0.06
VPS35-210ENST00000568784 TMCO1Q9UM00 188 aa14.66□□□□□ -0.06
VPS35-210ENST00000568784 COL11A2P13942 1736 aaPredicted RBP14.66□□□□□ -0.06
VPS35-210ENST00000568784 SPTLC1O15269 473 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 CCDC166P0CW27 439 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 SLC26A2P50443 739 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 CAPRIN1Q14444 709 aaKnown RBP14.65□□□□□ -0.06
VPS35-210ENST00000568784 NEDD8Q15843 81 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 MARVELD2Q8N4S9 558 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 IL22Q9GZX6 179 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 RHOJQ9H4E5 214 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 CRYL1Q9Y2S2 319 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 GRID2O43424 1007 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 HSPA13P48723 471 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 UGP2Q16851 508 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 GPR141Q7Z602 305 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 DHFR2Q86XF0 187 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 OFCC1Q8IZS5 231 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 NPWQ8N729 165 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 RPL10LQ96L21 214 aaKnown RBP14.65□□□□□ -0.06
VPS35-210ENST00000568784 ZFP42Q96MM3 310 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 PAIP1Q9H074 479 aaKnown RBP14.65□□□□□ -0.06
VPS35-210ENST00000568784 ALG9Q9H6U8 611 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 SFMBT1Q9UHJ3 866 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 CROTQ9UKG9 612 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 LY75O60449 1722 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 ZCWPW2A0A1B0GU75 182 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 DYNC1LI2O43237 492 aaPredicted RBP14.65□□□□□ -0.06
VPS35-210ENST00000568784 RPS12P25398 132 aaKnown RBP14.65□□□□□ -0.06
VPS35-210ENST00000568784 RAB10P61026 200 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 PIGGQ5H8A4 983 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 STXBP5Q5T5C0 1151 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 NOTUMQ6P988 496 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 SLC27A1Q6PCB7 646 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 HEXDCQ8WVB3 486 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 EMID1Q96A84 441 aaPredicted RBP14.65□□□□□ -0.06
VPS35-210ENST00000568784 RHOBTB2Q9BYZ6 727 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 MRPL46Q9H2W6 279 aaKnown RBP14.65□□□□□ -0.06
VPS35-210ENST00000568784 CHCHD3Q9NX63 227 aaKnown RBP14.65□□□□□ -0.06
VPS35-210ENST00000568784 RRN3Q9NYV6 651 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 LMCD1Q9NZU5 365 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 DOLKQ9UPQ8 538 aa14.65□□□□□ -0.06
VPS35-210ENST00000568784 ANKRD33BA6NCL7 494 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 TADA2AO75478 443 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 CYP2C9P11712 490 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 NPR3P17342 541 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 GLDCP23378 1020 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 HPCAP84074 193 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 MGAT5BQ3V5L5 792 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 ZNF410Q86VK4 478 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 ZC3HC1Q86WB0 502 aaKnown RBP14.64□□□□□ -0.07
VPS35-210ENST00000568784 CEP97Q8IW35 865 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 SEPHS2Q99611 448 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 SLC29A1Q99808 456 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 DNAAF2Q9NVR5 837 aaKnown RBP14.64□□□□□ -0.07
VPS35-210ENST00000568784 NFKBIEO00221 500 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 ANGPT2O15123 496 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 XPOTO43592 962 aaKnown RBP14.64□□□□□ -0.07
VPS35-210ENST00000568784 H2AFYO75367 372 aaKnown RBP14.64□□□□□ -0.07
VPS35-210ENST00000568784 PRDX6P30041 224 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 STT3AP46977 705 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 MAXP61244 160 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 OTUD3Q5T2D3 398 aaPredicted RBP14.64□□□□□ -0.07
VPS35-210ENST00000568784 ARHGAP17Q68EM7 881 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 ARHGAP36Q6ZRI8 547 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 DNAJB3Q8WWF6 145 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 DCPSQ96C86 337 aaKnown RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms