RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 SEPT6Q14141 434 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 CNGA3Q16281 694 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 C5orf22Q49AR2 442 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 KIAA0930Q6ICG6 404 aaPredicted RBP18.36■□□□□ 0.53
SMPD3-211ENST00000568373 CNKSR3Q6P9H4 555 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 LGI2Q8N0V4 545 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 SLC25A41Q8N5S1 370 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 INPP5DQ92835 1189 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 CLSTN3Q9BQT9 956 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 NACA2Q9H009 215 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 FBXO6Q9NRD1 293 aaPredicted RBP18.36■□□□□ 0.53
SMPD3-211ENST00000568373 SLC39A10Q9ULF5 831 aa18.36■□□□□ 0.53
SMPD3-211ENST00000568373 ACSL4O60488 711 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 SIN3BO75182 1162 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HAUS5O94927 633 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 AHSGP02765 367 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HSPA8P11142 646 aaKnown RBP18.35■□□□□ 0.53
SMPD3-211ENST00000568373 CPA3P15088 417 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 GRK2P25098 689 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 GABRB3P28472 473 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 ACVRL1P37023 503 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 IRF9Q00978 393 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 KLHDC10Q6PID8 442 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 TADA1Q96BN2 335 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 TMEM237Q96Q45 408 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 MARCOQ9UEW3 520 aaPredicted RBP18.35■□□□□ 0.53
SMPD3-211ENST00000568373 COL4A6Q14031 1691 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HEATR9A2RTY3 570 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 PRAMEF11O60813 436 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 SEC24AO95486 1093 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HSPA1AP0DMV8 641 aaKnown RBP18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HSPA1BP0DMV9 641 aaKnown RBP18.35■□□□□ 0.53
SMPD3-211ENST00000568373 KITP10721 976 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HMGA1P17096 107 aaKnown RBP18.35■□□□□ 0.53
SMPD3-211ENST00000568373 SLC6A4P31645 630 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 SLC1A6P48664 564 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HARS2P49590 506 aaKnown RBP18.35■□□□□ 0.53
SMPD3-211ENST00000568373 SERPINH1P50454 418 aaKnown RBP18.35■□□□□ 0.53
SMPD3-211ENST00000568373 RASSF2P50749 326 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 IHHQ14623 411 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 LBRQ14739 615 aaKnown RBP18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HSF5Q4G112 596 aaPredicted RBP18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HECTD3Q5T447 861 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 DENND6AQ8IWF6 608 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 PGBD5Q8N414 524 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 ZNF461Q8TAF7 563 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 ARRDC2Q8TBH0 407 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 RANBP9Q96S59 729 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 HSFX1Q9UBD0 423 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 CHD5Q8TDI0 1954 aa18.35■□□□□ 0.53
SMPD3-211ENST00000568373 ITM2AO43736 263 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 GJB5O95377 273 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 SOD2P04179 222 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 ETFBP38117 255 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 SLC11A2P49281 568 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 MPP1Q00013 466 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 CTBP1Q13363 440 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 THOC5Q13769 683 aaKnown RBP18.34■□□□□ 0.53
SMPD3-211ENST00000568373 USP10Q14694 798 aaKnown RBP18.34■□□□□ 0.53
SMPD3-211ENST00000568373 TMCO4Q5TGY1 634 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 RFWD3Q6PCD5 774 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 TNS4Q8IZW8 715 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 CFAP52Q8N1V2 620 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 SLC7A6OSQ96CW6 309 aaPredicted RBP18.34■□□□□ 0.53
SMPD3-211ENST00000568373 VWCEQ96DN2 955 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 WWP1Q9H0M0 922 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 TBX21Q9UL17 535 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 ANKRD6Q9Y2G4 727 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 TRAFD1O14545 582 aaPredicted RBP18.34■□□□□ 0.53
SMPD3-211ENST00000568373 COCHO43405 550 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 HNRNPCL1O60812 293 aaKnown RBP18.34■□□□□ 0.53
SMPD3-211ENST00000568373 ABLIM3O94929 683 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 RALBP11234 206 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 AQP5P55064 265 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 SNCBQ16143 134 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 RAPH1Q70E73 1250 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 RAB3IPQ96QF0 476 aaPredicted RBP18.34■□□□□ 0.53
SMPD3-211ENST00000568373 SIKE1Q9BRV8 207 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 FAM167BQ9BTA0 163 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 RETREG1Q9H6L5 497 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 NMRAL1Q9HBL8 299 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 UXTQ9UBK9 157 aaPredicted RBP18.34■□□□□ 0.53
SMPD3-211ENST00000568373 LNPEPQ9UIQ6 1025 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 TLK1Q9UKI8 766 aa18.34■□□□□ 0.53
SMPD3-211ENST00000568373 TTC24A2A3L6 582 aaPredicted RBP18.33■□□□□ 0.52
SMPD3-211ENST00000568373 LYPLA1O75608 230 aaPredicted RBP18.33■□□□□ 0.52
SMPD3-211ENST00000568373 SLC1A2P43004 574 aa18.33■□□□□ 0.52
SMPD3-211ENST00000568373 POLD2P49005 469 aa18.33■□□□□ 0.52
SMPD3-211ENST00000568373 MSLNQ13421 630 aaPredicted RBP18.33■□□□□ 0.52
SMPD3-211ENST00000568373 RIPK1Q13546 671 aa18.33■□□□□ 0.52
SMPD3-211ENST00000568373 SPOUT1Q5T280 376 aaKnown RBP18.33■□□□□ 0.52
SMPD3-211ENST00000568373 TPGS2Q68CL5 300 aa18.33■□□□□ 0.52
SMPD3-211ENST00000568373 ZNF470Q6ECI4 717 aa18.33■□□□□ 0.52
SMPD3-211ENST00000568373 C2CD4AQ8NCU7 369 aaPredicted RBP18.33■□□□□ 0.52
SMPD3-211ENST00000568373 PIWIL2Q8TC59 973 aaKnown RBP18.33■□□□□ 0.52
SMPD3-211ENST00000568373 MYRFLQ96LU7 910 aa18.33■□□□□ 0.52
SMPD3-211ENST00000568373 TUBB6Q9BUF5 446 aa18.33■□□□□ 0.52
SMPD3-211ENST00000568373 POLR1EQ9GZS1 481 aaKnown RBP18.33■□□□□ 0.52
SMPD3-211ENST00000568373 PDFQ9HBH1 243 aa18.33■□□□□ 0.52
SMPD3-211ENST00000568373 FCHO1O14526 889 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms