RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	LINGO4	Q6UY18	593 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	NYAP1	Q6ZVC0	841 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	ATCAY	Q86WG3	371 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	SPATA20	Q8TB22	786 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	PMEPA1	Q969W9	287 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	ABHD17A	Q96GS6	310 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	FAXDC2	Q96IV6	333 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	RPRD1A	Q96P16	312 aa	Predicted RBP	11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	LENG8	Q96PV6	779 aa	Predicted RBP	11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	PSMB7	Q99436	277 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	C1QTNF2	Q9BXJ5	285 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	SLC13A1	Q9BZW2	595 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	GGT7	Q9UJ14	662 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	DOLK	Q9UPQ8	538 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	HS3ST2	Q9Y278	367 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	RNF215	Q9Y6U7	377 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	SPTBN1	Q01082	2364 aa	Known RBP	11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	LRRK1	Q38SD2	2015 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	11.98	□□□□□ -0.49
CLK3-222	ENST00000568232		M0QYV0	167 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	CALU	O43852	315 aa	Predicted RBP	11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	CCL4	P13236	92 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	GGCX	P38435	758 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	MXI1	P50539	228 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	OXCT1	P55809	520 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	CUL2	Q13617	745 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	C16orf72	Q14CZ0	275 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	RABGAP1L	Q5R372	815 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	PHF19	Q5T6S3	580 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	DPY19L3	Q6ZPD9	716 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	CCNJL	Q8IV13	435 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	SFTPA2	Q8IWL1	248 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	CCDC114	Q96M63	670 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	CMKLR1	Q99788	373 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	MUC3B	Q9H195	1237 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	SEMA6C	Q9H3T2	930 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	MAGEF1	Q9HAY2	307 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	EXOC1	Q9NV70	894 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	GPR34	Q9UPC5	381 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	TRAF3IP3	Q9Y228	551 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	ITM2B	Q9Y287	266 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	WASF2	Q9Y6W5	498 aa		11.98	□□□□□ -0.49
CLK3-222	ENST00000568232	SYNJ2BP-COX16	A0A087WUM0	186 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	STMND1	H3BQB6	276 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	NKX2-8	O15522	239 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	FBXO21	O94952	628 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	TRUB2	O95900	331 aa	Known RBP	11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	NR1D1	P20393	614 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	SYT1	P21579	422 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	GNLY	P22749	145 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	CD82	P27701	267 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	GTF2H1	P32780	548 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	IGFALS	P35858	605 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	PSMC2	P35998	433 aa	Known RBP	11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	PPARD	Q03181	441 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	PTK2B	Q14289	1009 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	SLITRK4	Q8IW52	837 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	IL22RA1	Q8N6P7	574 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	UBR7	Q8N806	425 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	ATP6V0D2	Q8N8Y2	350 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	SSC4D	Q8WTU2	575 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	TSACC	Q96A04	125 aa	Predicted RBP	11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	TMEM159	Q96B96	161 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	CENPT	Q96BT3	561 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	PPP1R16A	Q96I34	528 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	TBATA	Q96M53	351 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	PPP1R9B	Q96SB3	815 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	COX16	Q9P0S2	106 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	VPS51	Q9UID3	782 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	VANGL2	Q9ULK5	521 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	DOPEY1	Q5JWR5	2465 aa		11.97	□□□□□ -0.49
CLK3-222	ENST00000568232	PRR19	A6NJB7	356 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232		K7EM74	188 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	RNF225	M0QZC1	329 aa	Predicted RBP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	AP1G1	O43747	822 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	DUX1	O43812	170 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	PPP6R2	O75170	966 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	SEMA7A	O75326	666 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	ZNF821	O75541	412 aa	Predicted RBP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	CNTN5	O94779	1100 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	IGLV3-25	P01717	112 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	PRKAR1A	P10644	381 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	BRD2	P25440	801 aa	Known RBP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	ITGB7	P26010	798 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	L1CAM	P32004	1257 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	EIF4A3	P38919	411 aa	Known RBP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	ABL2	P42684	1182 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	ATP1A2	P50993	1020 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	LRMP	Q12912	555 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	EIF4EBP2	Q13542	120 aa	Predicted RBP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	AUH	Q13825	339 aa	Known RBP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	ELOC	Q15369	112 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	CBWD6	Q4V339	395 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	CBWD3	Q5JTY5	395 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	CBWD5	Q5RIA9	395 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	FHL5	Q5TD97	284 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	TMEM164	Q5U3C3	297 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	C22orf39	Q6P5X5	142 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	PARS2	Q7L3T8	475 aa	Known RBP	11.96	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms