RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 WDR59Q6PJI9 974 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 PARS2Q7L3T8 475 aaKnown RBP16.35■□□□□ 0.21
CLN3-229ENST00000567963 PHF13Q86YI8 300 aaPredicted RBP16.35■□□□□ 0.21
CLN3-229ENST00000567963 DCP2Q8IU60 420 aaKnown RBP16.35■□□□□ 0.21
CLN3-229ENST00000567963 CACTIN-AS1Q8N1I8 211 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 RFFLQ8WZ73 363 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 NTAN1Q96AB6 310 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 VOPP1Q96AW1 172 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 NXPE2Q96DL1 559 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 TBC1D31Q96DN5 1066 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 LRIG1Q96JA1 1093 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 SELENOOQ9BVL4 669 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 NRSN2Q9GZP1 204 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 GPR27Q9NS67 375 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 LIMA1Q9UHB6 759 aaKnown RBP16.35■□□□□ 0.21
CLN3-229ENST00000567963 SMG1Q96Q15 3661 aaKnown RBP16.35■□□□□ 0.21
CLN3-229ENST00000567963 POM121BA6NF01 834 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 LRRC10BA6NIK2 292 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 SIGLEC16A6NMB1 481 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 C16orf96A6NNT2 1141 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 RAMP2O60895 175 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 CALB1P05937 261 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 E2F1Q01094 437 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 INSM1Q01101 510 aaPredicted RBP16.35■□□□□ 0.21
CLN3-229ENST00000567963 ZNF805Q5CZA5 627 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 SLFN11Q7Z7L1 901 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 ZSCAN30Q86W11 494 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 RYBPQ8N488 228 aaPredicted RBP16.35■□□□□ 0.21
CLN3-229ENST00000567963 C3orf20Q8ND61 904 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 NEK11Q8NG66 645 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 OR2AP1Q8NGE2 309 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 OR6K2Q8NGY2 324 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 RAB7BQ96AH8 199 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 PCMTD1Q96MG8 357 aaPredicted RBP16.35■□□□□ 0.21
CLN3-229ENST00000567963 CAAP1Q9H8G2 361 aa16.35■□□□□ 0.21
CLN3-229ENST00000567963 RAD51BO15315 384 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 FFAR2O15552 330 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 TSPAN6O43657 245 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 KDELR3O43731 214 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 POP4O95707 220 aaKnown RBP16.34■□□□□ 0.21
CLN3-229ENST00000567963 GSRP00390 522 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 GPD1P21695 349 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 SNRPD1P62314 119 aaKnown RBP16.34■□□□□ 0.21
CLN3-229ENST00000567963 DAB2P98082 770 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 UBXN1Q04323 297 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 RTP5Q14D33 572 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 SASS6Q6UVJ0 657 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 KYAT3Q6YP21 454 aaKnown RBP16.34■□□□□ 0.21
CLN3-229ENST00000567963 LEKR1Q6ZMV7 388 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 MON1BQ7L1V2 547 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 PTAR1Q7Z6K3 402 aaPredicted RBP16.34■□□□□ 0.21
CLN3-229ENST00000567963 PYROXD2Q8N2H3 581 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 ANKRD20A12PQ8NF67 263 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 LENG8Q96PV6 779 aaPredicted RBP16.34■□□□□ 0.21
CLN3-229ENST00000567963 KLF6Q99612 283 aaPredicted RBP16.34■□□□□ 0.21
CLN3-229ENST00000567963 C1QTNF2Q9BXJ5 285 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 CLCA2Q9UQC9 943 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 AK5Q9Y6K8 562 aa16.34■□□□□ 0.21
CLN3-229ENST00000567963 SPTY2D1-AS1A0A0U1RR47 76 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 TCRBV5S1A1TA0A578 114 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 NEMP2A6NFY4 417 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 IGLON5A6NGN9 336 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 LGALS16A8MUM7 142 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 KRIT1O00522 736 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 CKMT1AP12532 417 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 ABL2P42684 1182 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 HNRNPKP61978 463 aaKnown RBP eCLIP16.33■□□□□ 0.2
CLN3-229ENST00000567963 MYL5Q02045 173 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 SEMG2Q02383 582 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 SGCGQ13326 291 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 FZD2Q14332 565 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 MYLK3Q32MK0 819 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 ZNF542PQ5EBM4 170 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 ERGIC2Q96RQ1 377 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 AGPAT1Q99943 283 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 OSBPL1AQ9BXW6 950 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 ANO10Q9NW15 660 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 DNAJC28Q9NX36 388 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 NLGN3Q9NZ94 848 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 GGT7Q9UJ14 662 aa16.33■□□□□ 0.2
CLN3-229ENST00000567963 ZSCAN5CA6NGD5 496 aaPredicted RBP16.32■□□□□ 0.2
CLN3-229ENST00000567963 FPGTO14772 594 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 SCAMP1O15126 338 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 CSF2P04141 144 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 UGT2B4P06133 528 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 ALPPL2P10696 532 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 CDK11BP21127 795 aaKnown RBP16.32■□□□□ 0.2
CLN3-229ENST00000567963 EPHB2P29323 1055 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 RABIFP47224 123 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 ZNF143P52747 638 aaPredicted RBP16.32■□□□□ 0.2
CLN3-229ENST00000567963 C1QBPQ07021 282 aaKnown RBP16.32■□□□□ 0.2
CLN3-229ENST00000567963 COL9A2Q14055 689 aaPredicted RBP16.32■□□□□ 0.2
CLN3-229ENST00000567963 SCYL2Q6P3W7 929 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 TMC6Q7Z403 805 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 DCBLD1Q8N8Z6 715 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 ASB12Q8WXK4 309 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 APOLD1Q96LR9 279 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 KLHL32Q96NJ5 620 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 DCBLD2Q96PD2 775 aa16.32■□□□□ 0.2
CLN3-229ENST00000567963 DUSP23Q9BVJ7 150 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms