RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 GPT2Q8TD30 523 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 ASB12Q8WXK4 309 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 RAB7BQ96AH8 199 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 PCDHB18PQ96TA0 734 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 KLF6Q99612 283 aaPredicted RBP17.42■□□□□ 0.38
CLN3-216ENST00000565316 C11orf70Q9BRQ4 267 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 MAGEB5Q9BZ81 275 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 CAAP1Q9H8G2 361 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 FAM207AQ9NSI2 230 aaPredicted RBP17.42■□□□□ 0.38
CLN3-216ENST00000565316 NLGN3Q9NZ94 848 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 SIK3Q9Y2K2 1263 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 AK5Q9Y6K8 562 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 TRPM6Q9BX84 2022 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 LY6G6EA0A0G2JKS1 128 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 SPTY2D1-AS1A0A0U1RR47 76 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 C16orf96A6NNT2 1141 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 SCAMP1O15126 338 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 FFAR2O15552 330 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 TSPAN6O43657 245 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 LRIG2O94898 1065 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 GJB6O95452 261 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 MT-CO3P00414 261 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 PLEKP08567 350 aaPredicted RBP17.41■□□□□ 0.38
CLN3-216ENST00000565316 DAB2P98082 770 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 MAPK8IP2Q13387 824 aaPredicted RBP17.41■□□□□ 0.38
CLN3-216ENST00000565316 HS1BP3Q53T59 392 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 ZNF805Q5CZA5 627 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 CDCP2Q5VXM1 449 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 PTAR1Q7Z6K3 402 aaPredicted RBP17.41■□□□□ 0.38
CLN3-216ENST00000565316 PHLDB2Q86SQ0 1253 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 CCDC185Q8N715 623 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 SNIP1Q8TAD8 396 aaKnown RBP17.41■□□□□ 0.38
CLN3-216ENST00000565316 NTAN1Q96AB6 310 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 TBC1D31Q96DN5 1066 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 CRELD1Q96HD1 420 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 DCBLD2Q96PD2 775 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 BBC3Q96PG8 261 aaPredicted RBP17.41■□□□□ 0.38
CLN3-216ENST00000565316 TM6SF2Q9BZW4 377 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 ZDHHC6Q9H6R6 413 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 USP29Q9HBJ7 922 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 DNAI1Q9UI46 699 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 U3KQA8 63 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 CHD5Q8TDI0 1954 aa17.41■□□□□ 0.38
CLN3-216ENST00000565316 NEMP2A6NFY4 417 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 IGLON5A6NGN9 336 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 SPINT1O43278 529 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 CSF2P04141 144 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 ALPPL2P10696 532 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 KRT3P12035 628 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 NME1P15531 152 aaKnown RBP17.4■□□□□ 0.38
CLN3-216ENST00000565316 GKP32189 559 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 RFC1P35251 1148 aaPredicted RBP17.4■□□□□ 0.38
CLN3-216ENST00000565316 STAT1P42224 750 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 ABL2P42684 1182 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 ABCG1P45844 678 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 RABIFP47224 123 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 HNRNPKP61978 463 aaKnown RBP eCLIP17.4■□□□□ 0.38
CLN3-216ENST00000565316 MYLK3Q32MK0 819 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 RBM43Q6ZSC3 357 aaKnown RBP17.4■□□□□ 0.38
CLN3-216ENST00000565316 PHF13Q86YI8 300 aaPredicted RBP17.4■□□□□ 0.38
CLN3-216ENST00000565316 OR2AP1Q8NGE2 309 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 FAM172AQ8WUF8 416 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 APOLD1Q96LR9 279 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 DUSP23Q9BVJ7 150 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 NLRC4Q9NPP4 1024 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 LMBRD1Q9NUN5 540 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 DNAJC28Q9NX36 388 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 ADAM22Q9P0K1 906 aa17.4■□□□□ 0.38
CLN3-216ENST00000565316 MYLKQ15746 1914 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 PTPRQQ9UMZ3 2332 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 BPTFQ12830 3046 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 K7ESM1 405 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 AREL1O15033 823 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 KDELR3O43731 214 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 OPA1O60313 960 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 RAMP2O60895 175 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 POP4O95707 220 aaKnown RBP17.39■□□□□ 0.37
CLN3-216ENST00000565316 GP1BAP07359 652 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 ITPKBP27987 946 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 NSFP46459 744 aaKnown RBP17.39■□□□□ 0.37
CLN3-216ENST00000565316 SNRPD1P62314 119 aaKnown RBP17.39■□□□□ 0.37
CLN3-216ENST00000565316 SGCGQ13326 291 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 POLD3Q15054 466 aaPredicted RBP17.39■□□□□ 0.37
CLN3-216ENST00000565316 CLEC16AQ2KHT3 1053 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 ZNF542PQ5EBM4 170 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 FKBP15Q5T1M5 1219 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 WDR59Q6PJI9 974 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 TMC6Q7Z403 805 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 DENND6BQ8NEG7 585 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 ZNF548Q8NEK5 533 aaPredicted RBP17.39■□□□□ 0.37
CLN3-216ENST00000565316 OR6K2Q8NGY2 324 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 FGF11Q92914 225 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 OSBPL1AQ9BXW6 950 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 NOL6Q9H6R4 1146 aaKnown RBP17.39■□□□□ 0.37
CLN3-216ENST00000565316 FANCLQ9NW38 375 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 HPCAL4Q9UM19 191 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 CSNK1G3Q9Y6M4 447 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 CFAP46Q8IYW2 2715 aa17.39■□□□□ 0.37
CLN3-216ENST00000565316 ZSCAN5CA6NGD5 496 aaPredicted RBP17.38■□□□□ 0.37
CLN3-216ENST00000565316 SIGLEC16A6NMB1 481 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms