RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 LAYNQ6UX15 382 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 SPOCD1Q6ZMY3 1216 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 PARS2Q7L3T8 475 aaKnown RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 ERMP1Q7Z2K6 904 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 REXO1L1PQ8IX06 675 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 RHOT1Q8IXI2 618 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 KATNAL2Q8IYT4 538 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 HDDC3Q8N4P3 179 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 PCDH20Q8N6Y1 951 aaKnown RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 CNTD1Q8N815 330 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 OR2AP1Q8NGE2 309 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 ISG20Q96AZ6 181 aaKnown RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 BIRC7Q96CA5 298 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 HSPA12BQ96MM6 686 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 OLFM3Q96PB7 478 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 LGMNQ99538 433 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 NCAPGQ9BPX3 1015 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 IRF2BPLQ9H1B7 796 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 HECAQ9UBI9 543 aaPredicted RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 UBA2Q9UBT2 640 aaPredicted RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 PILRBQ9UKJ0 227 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 ZFR2Q9UPR6 939 aaKnown RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 ITM2BQ9Y287 266 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 CA5BQ9Y2D0 317 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 CABIN1Q9Y6J0 2220 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 CACNA1GO43497 2377 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 NCOR2Q9Y618 2525 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 A0A0U1RQS6 177 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 CXorf51AA0A1B0GTR3 108 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 ARHGAP42A6NI28 874 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 USP27XA6NNY8 438 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 TRAFD1O14545 582 aaPredicted RBP9.35□□□□□ -0.91
VPS35-206ENST00000565228 ALOX15BO15296 676 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 ARHGAP6O43182 974 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 PSTPIP1O43586 416 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 SPOPO43791 374 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 ZNF217O75362 1048 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 RNASEH2AO75792 299 aaKnown RBP9.35□□□□□ -0.91
VPS35-206ENST00000565228 DNTTP04053 509 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 WNT1P04628 370 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 HLA-DQB2P05538 268 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 RETP07949 1114 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 C5AR1P21730 350 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 GARSP41250 739 aaKnown RBP9.35□□□□□ -0.91
VPS35-206ENST00000565228 DHPSP49366 369 aaPredicted RBP9.35□□□□□ -0.91
VPS35-206ENST00000565228 ZNF135P52742 658 aaPredicted RBP9.35□□□□□ -0.91
VPS35-206ENST00000565228 DYNLT1P63172 113 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 SLC20A2Q08357 652 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 NIPAL4Q0D2K0 466 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 ZNF211Q13398 564 aaPredicted RBP9.35□□□□□ -0.91
VPS35-206ENST00000565228 INO80DQ53TQ3 878 aaPredicted RBP9.35□□□□□ -0.91
VPS35-206ENST00000565228 NYAP1Q6ZVC0 841 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 USP30Q70CQ3 517 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 DAAM2Q86T65 1068 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 KIAA1328Q86T90 577 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 ZNF354CQ86Y25 554 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 CAMK1DQ8IU85 385 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 PLPP6Q8IY26 295 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 TEX26Q8N6G2 289 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 TMIEQ8NEW7 156 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 OR2I1PQ8NGU4 316 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 OR8D1Q8WZ84 308 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 MAML1Q92585 1016 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 FAM118BQ9BPY3 351 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 HEPHQ9BQS7 1158 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 CEP41Q9BYV8 373 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 SEMA4AQ9H3S1 761 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 ZDHHC6Q9H6R6 413 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 IL36AQ9UHA7 158 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 PYCARDQ9ULZ3 195 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 PCDHA3Q9Y5H8 950 aa9.35□□□□□ -0.91
VPS35-206ENST00000565228 ZNF487B1APH4 448 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 KPNA3O00505 521 aaPredicted RBP9.34□□□□□ -0.91
VPS35-206ENST00000565228 KRIT1O00522 736 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 FANCGO15287 622 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 PLRG1O43660 514 aaKnown RBP9.34□□□□□ -0.91
VPS35-206ENST00000565228 SEMA4FO95754 770 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 UGT2B4P06133 528 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 MMP2P08253 660 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 TIMP2P16035 220 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 DESP17661 470 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 GM2AP17900 193 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 MPLP40238 635 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 RHOAP61586 193 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 IRX4P78413 519 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 CREB5Q02930 508 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 ZBTB16Q05516 673 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 TRAF2Q12933 501 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 LBRQ14739 615 aaKnown RBP9.34□□□□□ -0.91
VPS35-206ENST00000565228 KAZNQ674X7 775 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 SEL1L3Q68CR1 1132 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 LPCAT2Q7L5N7 544 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 RFX6Q8HWS3 928 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 LZTR1Q8N653 840 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 ARRDC2Q8TBH0 407 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 DNASE2BQ8WZ79 361 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 RUBCNQ92622 972 aa9.34□□□□□ -0.91
VPS35-206ENST00000565228 PIGKQ92643 395 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms