RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 KCNT1Q5JUK3 1230 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 AGBL4Q5VU57 503 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 ERN2Q76MJ5 926 aaKnown RBP13.62□□□□□ -0.23
CLK3-216ENST00000564468 POLNQ7Z5Q5 900 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 ADAT2Q7Z6V5 191 aaKnown RBP13.62□□□□□ -0.23
CLK3-216ENST00000564468 MAP7D3Q8IWC1 876 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 MINDY1Q8N5J2 469 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 C1orf216Q8TAB5 229 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 GRIN3AQ8TCU5 1115 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 BTBD6Q96KE9 485 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 GDAP1L1Q96MZ0 367 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 HDAC8Q9BY41 377 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 TM6SF2Q9BZW4 377 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 ZDHHC6Q9H6R6 413 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 TM9SF3Q9HD45 589 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 LUC7LQ9NQ29 371 aaKnown RBP13.62□□□□□ -0.23
CLK3-216ENST00000564468 RCOR3Q9P2K3 495 aaPredicted RBP13.62□□□□□ -0.23
CLK3-216ENST00000564468 UBA2Q9UBT2 640 aaPredicted RBP13.62□□□□□ -0.23
CLK3-216ENST00000564468 WASF2Q9Y6W5 498 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 FRYQ5TBA9 3013 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 TM4SF5O14894 197 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 PRAMEF11O60813 436 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 TMCC1O94876 653 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 KRT7P08729 469 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 ITGB7P26010 798 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 MAN1A1P33908 653 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 ARHGAP25P42331 645 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 PAPOLAP51003 745 aaKnown RBP13.61□□□□□ -0.23
CLK3-216ENST00000564468 ZNF75DP51815 510 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 NEK3P51956 506 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 SLC25A11Q02978 314 aaKnown RBP13.61□□□□□ -0.23
CLK3-216ENST00000564468 GRIK2Q13002 908 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 SLC14A1Q13336 389 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 DPYSQ14117 519 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 MYLK3Q32MK0 819 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 FBXL19Q6PCT2 694 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 TMCO3Q6UWJ1 677 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 ZSCAN30Q86W11 494 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 TRIM69Q86WT6 500 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 CCDC170Q8IYT3 715 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 TC2NQ8N9U0 490 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 RAB7BQ96AH8 199 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 ARRDC3Q96B67 414 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 CELF6Q96J87 481 aaKnown RBP13.61□□□□□ -0.23
CLK3-216ENST00000564468 PACSIN1Q9BY11 444 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 SLC39A8Q9C0K1 460 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 SP110Q9HB58 689 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 SPTLC3Q9NUV7 552 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 DNAAF2Q9NVR5 837 aaKnown RBP13.61□□□□□ -0.23
CLK3-216ENST00000564468 DMTF1Q9Y222 760 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 ACTL7AQ9Y615 435 aa13.61□□□□□ -0.23
CLK3-216ENST00000564468 UPK3BL1B0FP48 263 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 UPK3BL2E5RIL1 263 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 DFFAO00273 331 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 PLK4O00444 970 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 KRIT1O00522 736 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 LATO43561 262 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 DFNA5O60443 496 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 CYLC1P35663 651 aaPredicted RBP13.6□□□□□ -0.23
CLK3-216ENST00000564468 CSNK1EP49674 416 aaKnown RBP13.6□□□□□ -0.23
CLK3-216ENST00000564468 METAP1P53582 386 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 CDH6P55285 790 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 C21orf59P57076 290 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 IL10RBQ08334 325 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 RFTN1Q14699 578 aaPredicted RBP13.6□□□□□ -0.23
CLK3-216ENST00000564468 PDK2Q15119 407 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 SETMARQ53H47 684 aaPredicted RBP13.6□□□□□ -0.23
CLK3-216ENST00000564468 ZNF805Q5CZA5 627 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 PIP5KL1Q5T9C9 394 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 TMCO4Q5TGY1 634 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 AFMIDQ63HM1 303 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 LEKR1Q6ZMV7 388 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 SLC35G2Q8TBE7 412 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 RFFLQ8WZ73 363 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 CSPG4P5Q96PW8 444 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 KLC2Q9H0B6 622 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 SLC32A1Q9H598 525 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 PCDH18Q9HCL0 1135 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 AASDHPPTQ9NRN7 309 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 MFHAS1Q9Y4C4 1052 aa13.6□□□□□ -0.23
CLK3-216ENST00000564468 A0A1B0GVT2 93 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 C10orf142B7Z368 130 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 VILLO15195 856 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 AP1G1O43747 822 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 MAGEC1O60732 1142 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 RNGTTO60942 597 aaKnown RBP13.59□□□□□ -0.23
CLK3-216ENST00000564468 PALMO75781 387 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 MTA2O94776 668 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 PCDH8O95206 1070 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 KCNK5O95279 499 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 ZNF883P0CG24 379 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 ADRB3P13945 408 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 TCF4P15884 667 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 CSRP1P21291 193 aaKnown RBP13.59□□□□□ -0.23
CLK3-216ENST00000564468 AMPD1P23109 780 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 CD38P28907 300 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 RENBPP51606 427 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 HNRNPDQ14103 355 aaKnown RBP13.59□□□□□ -0.23
CLK3-216ENST00000564468 MESDQ14696 234 aa13.59□□□□□ -0.23
CLK3-216ENST00000564468 SPA17Q15506 151 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms