RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 HORMAD1Q86X24 394 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 TMEM145Q8NBT3 493 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 OR4C6Q8NH72 309 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 FAM172AQ8WUF8 416 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 LGMNQ99538 433 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 ZDHHC6Q9H6R6 413 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 LGALS16A8MUM7 142 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 MPOP05164 745 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 MYF5P13349 255 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 STAT1P42224 750 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 HDAC4P56524 1084 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 MYL5Q02045 173 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 CFHR1Q03591 330 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 ERN2Q76MJ5 926 aaKnown RBP19.34■□□□□ 0.69
VPS35-202ENST00000561713 PARS2Q7L3T8 475 aaKnown RBP19.34■□□□□ 0.69
VPS35-202ENST00000561713 NETO2Q8NC67 525 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 TMIEQ8NEW7 156 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 OR13H1Q8NG92 308 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 CALN1Q9BXU9 219 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 OR12D3Q9UGF7 316 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 ITM2BQ9Y287 266 aa19.34■□□□□ 0.69
VPS35-202ENST00000561713 OPA1O60313 960 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 LRIG2O94898 1065 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 CD160O95971 181 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 GIMD1P0DJR0 217 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 UNGP13051 313 aaPredicted RBP19.33■□□□□ 0.68
VPS35-202ENST00000561713 ADRA1BP35368 520 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 NSFP46459 744 aaKnown RBP19.33■□□□□ 0.68
VPS35-202ENST00000561713 MAPK8IP2Q13387 824 aaPredicted RBP19.33■□□□□ 0.68
VPS35-202ENST00000561713 STX1AQ16623 288 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 CLEC16AQ2KHT3 1053 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 LRRC73Q5JTD7 316 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 CDCP2Q5VXM1 449 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 RETSATQ6NUM9 610 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 ZNF783Q6ZMS7 281 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 TRIM72Q6ZMU5 477 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 GCNT7Q6ZNI0 430 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 ARCQ7LC44 396 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 NLRP14Q86W24 1093 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 SLC22A18ASQ8N1D0 253 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 PYROXD2Q8N2H3 581 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 RYBPQ8N488 228 aaPredicted RBP19.33■□□□□ 0.68
VPS35-202ENST00000561713 ZNF248Q8NDW4 579 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 NEK11Q8NG66 645 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 HIC2Q96JB3 615 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 CPNE5Q9HCH3 593 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 KLHL11Q9NVR0 708 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 ADAM22Q9P0K1 906 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 PPARGC1AQ9UBK2 798 aaKnown RBP19.33■□□□□ 0.68
VPS35-202ENST00000561713 GGT7Q9UJ14 662 aa19.33■□□□□ 0.68
VPS35-202ENST00000561713 ERVH48-1M5A8F1 160 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 CCP110O43303 1012 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 CKMT1AP12532 417 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 ADRB3P13945 408 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 GPD1P21695 349 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 RFC1P35251 1148 aaPredicted RBP19.32■□□□□ 0.68
VPS35-202ENST00000561713 PTPN9P43378 593 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 NEK3P51956 506 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 PCBP4P57723 403 aaKnown RBP19.32■□□□□ 0.68
VPS35-202ENST00000561713 UBXN1Q04323 297 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 FGL2Q14314 439 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 HS1BP3Q53T59 392 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 SASS6Q6UVJ0 657 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 MON1BQ7L1V2 547 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 PTAR1Q7Z6K3 402 aaPredicted RBP19.32■□□□□ 0.68
VPS35-202ENST00000561713 PCDH20Q8N6Y1 951 aaKnown RBP19.32■□□□□ 0.68
VPS35-202ENST00000561713 TBC1D31Q96DN5 1066 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 PPP1R16AQ96I34 528 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 ZNF578Q96N58 590 aaPredicted RBP19.32■□□□□ 0.68
VPS35-202ENST00000561713 SELENOOQ9BVL4 669 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 CEP44Q9C0F1 390 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 HSD3B7Q9H2F3 369 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 ANO10Q9NW15 660 aa19.32■□□□□ 0.68
VPS35-202ENST00000561713 LIMA1Q9UHB6 759 aaKnown RBP19.32■□□□□ 0.68
VPS35-202ENST00000561713 USP12O75317 370 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 KRT3P12035 628 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 ATP1A3P13637 1013 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 HNRNPA2B1P22626 353 aaKnown RBP19.31■□□□□ 0.68
VPS35-202ENST00000561713 ITGB7P26010 798 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 AKT2P31751 481 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 ABL2P42684 1182 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 GABREP78334 506 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 ARL13BQ3SXY8 428 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 TMEM259Q4ZIN3 620 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 TAF1BQ53T94 588 aaPredicted RBP19.31■□□□□ 0.68
VPS35-202ENST00000561713 ZNF542PQ5EBM4 170 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 CARD16Q5EG05 197 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 ATXN7L2Q5T6C5 722 aaPredicted RBP19.31■□□□□ 0.68
VPS35-202ENST00000561713 STRADAQ7RTN6 431 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 APTXQ7Z2E3 356 aaKnown RBP19.31■□□□□ 0.68
VPS35-202ENST00000561713 AOPEPQ8N6M6 819 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 ARHGEF2Q92974 986 aaKnown RBP19.31■□□□□ 0.68
VPS35-202ENST00000561713 MCEEQ96PE7 176 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 GBP4Q96PP9 640 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 HEPHQ9BQS7 1158 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 HDAC8Q9BY41 377 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 OSBPL2Q9H1P3 480 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 TMEM248Q9NWD8 314 aa19.31■□□□□ 0.68
VPS35-202ENST00000561713 LY6G6EA0A0G2JKS1 128 aa19.3■□□□□ 0.68
VPS35-202ENST00000561713 RAD51BO15315 384 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms