RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 POLD3Q15054 466 aaPredicted RBP16.5■□□□□ 0.23
SNX1-213ENST00000561026 HES3Q5TGS1 186 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 Q6ZSR6 202 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 PARS2Q7L3T8 475 aaKnown RBP16.5■□□□□ 0.23
SNX1-213ENST00000561026 DCP2Q8IU60 420 aaKnown RBP16.5■□□□□ 0.23
SNX1-213ENST00000561026 SLC22A18ASQ8N1D0 253 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 OR6K2Q8NGY2 324 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 HNRNPLLQ8WVV9 542 aaKnown RBP16.5■□□□□ 0.23
SNX1-213ENST00000561026 IFT43Q96FT9 208 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 GBP4Q96PP9 640 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 ERGIC2Q96RQ1 377 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 UCKL1Q9NWZ5 548 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 TCRBV5S1A1TA0A578 114 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 C16orf96A6NNT2 1141 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 A6NNZ2 444 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 KDELR3O43731 214 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 POP4O95707 220 aaKnown RBP16.49■□□□□ 0.23
SNX1-213ENST00000561026 GKP32189 559 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 SNRPD1P62314 119 aaKnown RBP16.49■□□□□ 0.23
SNX1-213ENST00000561026 STX1AQ16623 288 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 COL28A1Q2UY09 1125 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 ZNF805Q5CZA5 627 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 MON1BQ7L1V2 547 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 APTXQ7Z2E3 356 aaKnown RBP16.49■□□□□ 0.23
SNX1-213ENST00000561026 SLFN11Q7Z7L1 901 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 ZSCAN30Q86W11 494 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 RYBPQ8N488 228 aaPredicted RBP16.49■□□□□ 0.23
SNX1-213ENST00000561026 OR2AP1Q8NGE2 309 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 OR4C6Q8NH72 309 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 RFFLQ8WZ73 363 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 RAB7BQ96AH8 199 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 VOPP1Q96AW1 172 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 AGPAT1Q99943 283 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 C1QTNF2Q9BXJ5 285 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 HSD3B7Q9H2F3 369 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 SCUBE2Q9NQ36 999 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 GPR27Q9NS67 375 aa16.49■□□□□ 0.23
SNX1-213ENST00000561026 SEPT11Q9NVA2 429 aaKnown RBP16.49■□□□□ 0.23
SNX1-213ENST00000561026 ADAMTS20P59510 1910 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 TRPM6Q9BX84 2022 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 POM121BA6NF01 834 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 KRIT1O00522 736 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 RAD51BO15315 384 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 TSPAN6O43657 245 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 PIAS2O75928 621 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 GSRP00390 522 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 GIMD1P0DJR0 217 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 HOXB3P14651 431 aaPredicted RBP16.48■□□□□ 0.23
SNX1-213ENST00000561026 CDK11BP21127 795 aaKnown RBP16.48■□□□□ 0.23
SNX1-213ENST00000561026 ZNF143P52747 638 aaPredicted RBP16.48■□□□□ 0.23
SNX1-213ENST00000561026 C1QBPQ07021 282 aaKnown RBP16.48■□□□□ 0.23
SNX1-213ENST00000561026 SGCGQ13326 291 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 NCAPHQ15003 741 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 MYLK3Q32MK0 819 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 HS1BP3Q53T59 392 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 KYAT3Q6YP21 454 aaKnown RBP16.48■□□□□ 0.23
SNX1-213ENST00000561026 LEKR1Q6ZMV7 388 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 CACTIN-AS1Q8N1I8 211 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 PYROXD2Q8N2H3 581 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 RTL3Q8N8U3 475 aaKnown RBP16.48■□□□□ 0.23
SNX1-213ENST00000561026 NXPE2Q96DL1 559 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 KLF6Q99612 283 aaPredicted RBP16.48■□□□□ 0.23
SNX1-213ENST00000561026 NOL6Q9H6R4 1146 aaKnown RBP16.48■□□□□ 0.23
SNX1-213ENST00000561026 CAAP1Q9H8G2 361 aa16.48■□□□□ 0.23
SNX1-213ENST00000561026 CHD5Q8TDI0 1954 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 A0A087WV48 116 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 ZSCAN5CA6NGD5 496 aaPredicted RBP16.47■□□□□ 0.23
SNX1-213ENST00000561026 IGLON5A6NGN9 336 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 FFAR2O15552 330 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 BUB1O43683 1085 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 EPHB2P29323 1055 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 ABL2P42684 1182 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 E2F1Q01094 437 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 INSM1Q01101 510 aaPredicted RBP16.47■□□□□ 0.23
SNX1-213ENST00000561026 EFHC2Q5JST6 749 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 DNAJC24Q6P3W2 148 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 SCYL2Q6P3W7 929 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 PTAR1Q7Z6K3 402 aaPredicted RBP16.47■□□□□ 0.23
SNX1-213ENST00000561026 PDZD3Q86UT5 571 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 ASB12Q8WXK4 309 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 LENG8Q96PV6 779 aaPredicted RBP16.47■□□□□ 0.23
SNX1-213ENST00000561026 OSBPL1AQ9BXW6 950 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 NRSN2Q9GZP1 204 aa16.47■□□□□ 0.23
SNX1-213ENST00000561026 SPTY2D1-AS1A0A0U1RR47 76 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 ANKRD62A6NC57 917 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 NEMP2A6NFY4 417 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 NEMP1O14524 444 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 CCP110O43303 1012 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 UGT2B4P06133 528 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 RABIFP47224 123 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 HNRNPKP61978 463 aaKnown RBP eCLIP16.46■□□□□ 0.23
SNX1-213ENST00000561026 RPL7AP62424 266 aaKnown RBP16.46■□□□□ 0.23
SNX1-213ENST00000561026 DAB2P98082 770 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 FZD2Q14332 565 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 RTP5Q14D33 572 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 INO80DQ53TQ3 878 aaPredicted RBP16.46■□□□□ 0.23
SNX1-213ENST00000561026 ZNF542PQ5EBM4 170 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 PPP1R15BQ5SWA1 713 aa16.46■□□□□ 0.23
SNX1-213ENST00000561026 ATXN7L2Q5T6C5 722 aaPredicted RBP16.46■□□□□ 0.23
SNX1-213ENST00000561026 ACAD10Q6JQN1 1059 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms