RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 KPNA3O00505 521 aaPredicted RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 KRIT1O00522 736 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 POP4O95707 220 aaKnown RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 PEX11BO96011 259 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 RBP3P10745 1247 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 VAV1P15498 845 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 PRLRP16471 622 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 NFKBIAP25963 317 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 OXTRP30559 389 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 CASQ1P31415 396 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 CNR2P34972 360 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 ACTN2P35609 894 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 PTPN5P54829 565 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 RPS14P62263 151 aaKnown RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 ETF1P62495 437 aaKnown RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 ITKQ08881 620 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 CYTH1Q15438 398 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 CST6Q15828 149 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 USP39Q53GS9 565 aaKnown RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 ITPRIPL1Q6GPH6 555 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 DARS2Q6PI48 645 aaKnown RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 USP30Q70CQ3 517 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 WDR5BQ86VZ2 330 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 MMAAQ8IVH4 418 aaKnown RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 RASGEF1CQ8N431 466 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 TEX26Q8N6G2 289 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 PIP4K2CQ8TBX8 421 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 GANCQ8TET4 914 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 LRRC45Q96CN5 670 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 EXOC2Q96KP1 924 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 PPP1R2P1Q96PQ5 205 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 NUDCD1Q96RS6 583 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 OMDQ99983 421 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 MKRN2Q9H000 416 aaKnown RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 MTG2Q9H4K7 406 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 ATP13A3Q9H7F0 1226 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 CD248Q9HCU0 757 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 SCUBE2Q9NQ36 999 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 C2orf42Q9NWW7 574 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 ZSCAN32Q9NX65 697 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 KLHL8Q9P2G9 620 aaPredicted RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 SAE1Q9UBE0 346 aaPredicted RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 LHX3Q9UBR4 397 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 TTC7AQ9ULT0 858 aaPredicted RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 FZD4Q9ULV1 537 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 PCDHGA2Q9Y5H1 932 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 ACTL7AQ9Y615 435 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 SAR1BQ9Y6B6 198 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 NUP205Q92621 2012 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 BCLAF3A2AJT9 711 aaKnown RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 KCNK1O00180 336 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 SLC7A4O43246 635 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 ZNF821O75541 412 aaPredicted RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 SP9P0CG40 484 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 C7P10643 843 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 TDGF1P13385 188 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 ITGB7P26010 798 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 CXCR5P32302 372 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 TNNT3P45378 269 aaPredicted RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 SCNN1BP51168 640 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 BCL2L1Q07817 233 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 MYLK3Q32MK0 819 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 ATXN7L2Q5T6C5 722 aaPredicted RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 PAPD7Q5XG87 772 aaKnown RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 ALG1LQ6GMV1 187 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 TSSK4Q6SA08 328 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 SLC36A4Q6YBV0 504 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 SRLQ86TD4 932 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 ZSCAN30Q86W11 494 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 C17orf53Q8N3J3 647 aaPredicted RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 TSEN2Q8NCE0 465 aaKnown RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 ACTRT1Q8TDG2 376 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 ERLEC1Q96DZ1 483 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 C16orf45Q96MC5 204 aaPredicted RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 ZNF641Q96N77 438 aaPredicted RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 WDR24Q96S15 920 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 IL12RB2Q99665 862 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 HERPUD2Q9BSE4 406 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 CPEB1Q9BZB8 566 aaKnown RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 TPSD1Q9BZJ3 242 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 PABPC3Q9H361 631 aaKnown RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 NT5MQ9NPB1 228 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 POLR3BQ9NW08 1133 aaPredicted RBP10.21□□□□□ -0.77
USP3-216ENST00000559873 RNF14Q9UBS8 474 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 TRHDEQ9UKU6 1024 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 PPM1HQ9ULR3 514 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 WASF2Q9Y6W5 498 aa10.21□□□□□ -0.77
USP3-216ENST00000559873 GOLGA6CA6NDK9 693 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 GOLGA6BA6NDN3 693 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 RNF103O00237 685 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 INSIG1O15503 277 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 KCNN4O15554 427 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 SOCS5O75159 536 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 LEFTY1O75610 366 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 RNASEH2AO75792 299 aaKnown RBP10.2□□□□□ -0.78
USP3-216ENST00000559873 RPP40O75818 363 aaKnown RBP10.2□□□□□ -0.78
USP3-216ENST00000559873 JCHAINP01591 159 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 HLA-DQB2P05538 268 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 UGT2B4P06133 528 aa10.2□□□□□ -0.78
USP3-216ENST00000559873 SERPINF2P08697 491 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms