RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 MYLK3Q32MK0 819 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 SRLQ86TD4 932 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 SFTPA1Q8IWL2 248 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 NDUFAF2Q8N183 169 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 PAF1Q8N7H5 531 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 CCDC89Q8N998 374 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 C12orf50Q8NA57 414 aaPredicted RBP9.37□□□□□ -0.91
LDLR-210ENST00000559340 TMIEQ8NEW7 156 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 TSTD1Q8NFU3 115 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 CCHCR1Q8TD31 782 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 HCAR2Q8TDS4 363 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 FRS2Q8WU20 508 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 PTPRN2Q92932 1015 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 MYO19Q96H55 970 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 PPP1R16AQ96I34 528 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 TEKT5Q96M29 485 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 NUDCD1Q96RS6 583 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 TUBGCP5Q96RT8 1024 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 ACOX2Q99424 681 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 HERPUD2Q9BSE4 406 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 CPEB1Q9BZB8 566 aaKnown RBP9.37□□□□□ -0.91
LDLR-210ENST00000559340 NT5MQ9NPB1 228 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 SCUBE2Q9NQ36 999 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 PRSS16Q9NQE7 514 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 DYRK4Q9NR20 520 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 SPATA6Q9NWH7 488 aaPredicted RBP9.37□□□□□ -0.91
LDLR-210ENST00000559340 MUC22E2RYF6 1773 aaPredicted RBP9.37□□□□□ -0.91
LDLR-210ENST00000559340 ZNF318Q5VUA4 2279 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 WASH3PC4AMC7 463 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 K7ERQ8 282 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 KCNK1O00180 336 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 RNF103O00237 685 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 NDC80O14777 642 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 INSIG1O15503 277 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 LAMTOR5O43504 91 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 SIN3BO75182 1162 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 GCATO75600 419 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 ANXA9O76027 345 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 PAPSS2O95340 614 aaPredicted RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 APBB3O95704 486 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 PEX11BO96011 259 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 ADH1BP00325 375 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 SERPINF2P08697 491 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 ACADMP11310 421 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 HLA-EP13747 358 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 PTPN3P26045 913 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 COILP38432 576 aaPredicted RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 NUMBP49757 651 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 SCNN1BP51168 640 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 NRLP54845 237 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 POLR2LP62875 67 aaKnown RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 BCL2L1Q07817 233 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 SIX1Q15475 284 aaPredicted RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 OASLQ15646 514 aaKnown RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 SLC14A2Q15849 920 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 P3H1Q32P28 736 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 TTC31Q49AM3 519 aaPredicted RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 CFAP58Q5T655 872 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 C9orf64Q5T6V5 341 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 ZNF776Q68DI1 518 aaPredicted RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 CWF19L1Q69YN2 538 aaKnown RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 CCDC70Q6NSX1 233 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 CCDC137Q6PK04 289 aaKnown RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 LEKR1Q6ZMV7 388 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 ARHGEF18Q6ZSZ5 1173 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 Q6ZVU0 165 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 SYDE1Q6ZW31 735 aaPredicted RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 STK40Q8N2I9 435 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 PGBD3Q8N328 593 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 CEP112Q8N8E3 955 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 PRELID2Q8N945 189 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 PRSS33Q8NF86 280 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 PRCCQ92733 491 aaPredicted RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 ZNF641Q96N77 438 aaPredicted RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 SPATA13Q96N96 652 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 SEMA3CQ99985 751 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 MGME1Q9BQP7 344 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 AP1M1Q9BXS5 423 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 TM6SF2Q9BZW4 377 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 SLC25A51Q9H1U9 297 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 ATP13A3Q9H7F0 1226 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 USP29Q9HBJ7 922 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 GLOD4Q9HC38 313 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 PAK5Q9P286 719 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 BCCIPQ9P287 314 aaKnown RBP eCLIP9.36□□□□□ -0.91
LDLR-210ENST00000559340 LHX3Q9UBR4 397 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 IL36AQ9UHA7 158 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 HCN2Q9UL51 889 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 NCKAP1Q9Y2A7 1128 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 R3HDM2Q9Y2K5 976 aaKnown RBP9.36□□□□□ -0.91
LDLR-210ENST00000559340 ATP8A1Q9Y2Q0 1164 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 TTLL3Q9Y4R7 772 aa9.36□□□□□ -0.91
LDLR-210ENST00000559340 PLXND1Q9Y4D7 1925 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 TCRBV21S2A2A0A5A6 115 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 ADAM23O75077 832 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 ZNF217O75362 1048 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 PDGFBP01127 241 aaPredicted RBP9.35□□□□□ -0.91
LDLR-210ENST00000559340 IFNB1P01574 187 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 IL1BP01584 269 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 DNTTP04053 509 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms