RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 A6NCN8 305 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 OR6C75A6NL08 312 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 M0QZQ0 153 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 CES2O00748 559 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 ZNF263O14978 683 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 TMCC2O75069 709 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 URI1O94763 535 aaPredicted RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 POMCP01189 267 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 FGBP02675 491 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 FUCA1P04066 466 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 CYP1A2P05177 515 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 TUBBP07437 444 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 FTH1P19P0C7X4 201 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 MMP8P22894 467 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 CALRP27797 417 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 SERPINF1P36955 418 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 ALDH7A1P49419 539 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 CLCNKBP51801 687 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 BCAT1P54687 386 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 RAD23BP54727 409 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 EPHB4P54760 987 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 CDH8P55286 799 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 CCL23P55773 120 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 POLE2P56282 527 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 GSCP56915 257 aaPredicted RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 NRG3P56975 720 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 NRG1Q02297 640 aaPredicted RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 YWHAHQ04917 246 aaPredicted RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 BST2Q10589 180 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 TRIM25Q14258 630 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 PIGHQ14442 188 aaPredicted RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 RPS6KA1Q15418 735 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 PFKFB4Q16877 469 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 WHAMMP3Q1A5X7 153 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 SOWAHAQ2M3V2 549 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 PAPD7Q5XG87 772 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 C16orf54Q6UWD8 224 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 SCARA5Q6ZMJ2 495 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 ARCQ7LC44 396 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 LIMS2Q7Z4I7 341 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 LRRTM4Q86VH4 590 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 DCP2Q8IU60 420 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 CILP2Q8IUL8 1156 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 GLB1L2Q8IW92 636 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 FAM20CQ8IXL6 584 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 GPR65Q8IYL9 337 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 MCOLN2Q8IZK6 566 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 LRRC43Q8N309 656 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 SLC35F6Q8N357 371 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 LZTR1Q8N653 840 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 ANKRD52Q8NB46 1076 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 SLC4A11Q8NBS3 891 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 PRSS33Q8NF86 280 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 OR10H5Q8NGA6 315 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 PHOSPHO2Q8TCD6 241 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 C2orf15Q8WU43 125 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 LPPQ93052 612 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 UTP4Q969X6 686 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 ZNF653Q96CK0 615 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 FOXRED1Q96CU9 486 aaPredicted RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 CYFIP2Q96F07 1278 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 PBKQ96KB5 322 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 HNRNPABQ99729 332 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 NUDT16L1Q9BRJ7 211 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 SMYD3Q9H7B4 428 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 SARS2Q9NP81 518 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 ITM2CQ9NQX7 267 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 RBM12Q9NTZ6 932 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 MIOSQ9NXC5 875 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 NSMCE4AQ9NXX6 385 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 DDX43Q9NXZ2 648 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 LRFN1Q9P244 771 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 MYOTQ9UBF9 498 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 ASH2LQ9UBL3 628 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 CNOT8Q9UFF9 292 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 TUBGCP4Q9UGJ1 667 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 AFF4Q9UHB7 1163 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 FEZ2Q9UHY8 353 aaPredicted RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 SCOCQ9UIL1 159 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 AJAP1Q9UKB5 411 aaPredicted RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 NENFQ9UMX5 172 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 REXO2Q9Y3B8 237 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 SAR1BQ9Y6B6 198 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 MAP1BP46821 2468 aaKnown RBP5.31□□□□□ -1.56
LDLR-209ENST00000558528 BRWD1Q9NSI6 2320 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 FRMPD3Q5JV73 1810 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 NCANO14594 1321 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 SF3B1O75533 1304 aaKnown RBP eCLIP5.3□□□□□ -1.56
LDLR-209ENST00000558528 ASH1LQ9NR48 2969 aaKnown RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 PRRC2BQ5JSZ5 2229 aaKnown RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 MYH9P35579 1960 aaKnown RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 CASTOR2A6NHX0 329 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 FAM90A27PA6NNH2 459 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 USP27XA6NNY8 438 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 TBKBP1A7MCY6 615 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 TMCO5BA8MYB1 307 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 H3BM21 787 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 H3BUI4 141 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 M0QYV0 167 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 O00370 1275 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms