RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FAM72BQ86X60 149 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 ERI1Q8IV48 349 aaKnown RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 EXOC8Q8IYI6 725 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 FIBCD1Q8N539 461 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 OR6P1Q8NGX9 317 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 RBM38Q9H0Z9 239 aaKnown RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 TSPYL2Q9H2G4 693 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 SNX25Q9H3E2 840 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 ZNF696Q9H7X3 374 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 PNPLA3Q9NST1 481 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 OXSMQ9NWU1 459 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 TIMM13Q9Y5L4 95 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 STRCQ7RTU9 1775 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 EVPLQ92817 2033 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 COL16A1Q07092 1604 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 K7EPI3 171 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 BCAS2O75934 225 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 BAIAP3O94812 1187 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 ARIH2O95376 493 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 COL6A2P12110 1019 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 GLDCP23378 1020 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 ZNF470Q6ECI4 717 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 GALNT18Q6P9A2 607 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 IFNLR1Q8IU57 520 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 SIX6OS1Q8N1H7 587 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 CDHR5Q9HBB8 845 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 MORF4L1Q9UBU8 362 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 TUBGCP4Q9UGJ1 667 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 COQ6Q9Y2Z9 468 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 TCAF2A6NFQ2 919 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 PFKMP08237 780 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 ZNF26P17031 533 aaPredicted RBP11.46□□□□□ -0.57
LDLR-208ENST00000558518 NUP107P57740 925 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 SYPL2Q5VXT5 272 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 REP15Q6BDI9 236 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 CNSTQ6PJW8 725 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 YIPF2Q9BWQ6 316 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 ZBTB26Q9HCK0 441 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 MTMR10Q9NXD2 777 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 SLC2A6Q9UGQ3 507 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 CROTQ9UKG9 612 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 NUDT5Q9UKK9 219 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 OAZ3Q9UMX2 235 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 ZNF232Q9UNY5 417 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 BTRCQ9Y297 605 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 MICAL3Q7RTP6 2002 aa11.46□□□□□ -0.57
LDLR-208ENST00000558518 COL5A3P25940 1745 aaPredicted RBP11.46□□□□□ -0.57
LDLR-208ENST00000558518 AURKAO14965 403 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 ERCC2P18074 760 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 ABCD1P33897 745 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 CDK9P50750 372 aaKnown RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 CYP51A1Q16850 503 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 AARS2Q5JTZ9 985 aaKnown RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 TIFABQ6ZNK6 161 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 TMCO5AQ8N6Q1 288 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 TMEM102Q8N9M5 508 aaPredicted RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 ZBTB8BQ8NAP8 495 aaPredicted RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 OSBPL11Q9BXB4 747 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 SMOXQ9NWM0 555 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 EVLQ9UI08 416 aaPredicted RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 NCF1BA6NI72 391 aaPredicted RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 A8MU76 341 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 NCF1CA8MVU1 366 aaPredicted RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 PTGES3LE9PB15 166 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 PLA2G6O60733 806 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 NPM3O75607 178 aaKnown RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 MOCS2O96007 188 aaPredicted RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 PIGRP01833 764 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 ZNF286BP0CG31 522 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 HSPA8P11142 646 aaKnown RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 NCF1P14598 390 aaPredicted RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 STMN1P16949 149 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 ARF4P18085 180 aaPredicted RBP11.46□□□□□ -0.58
LDLR-208ENST00000558518 PRKCQQ04759 706 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 PMS2P3Q13401 168 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 TRIM16LQ309B1 348 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 LCLAT1Q6UWP7 414 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 CEP97Q8IW35 865 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 APBB2Q92870 758 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 ABHD8Q96I13 439 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 ZFYVE28Q9HCC9 887 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 PDGFCQ9NRA1 345 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 OLAHQ9NV23 265 aa11.46□□□□□ -0.58
LDLR-208ENST00000558518 BTAF1O14981 1849 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 FAM95CA0A1B0GW59 222 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 H3BNH8 94 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 EI24O14681 340 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 FAM189A1O60320 539 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 B4GALT4O60513 344 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 TSPAN3O60637 253 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 ATP5BP06576 529 aaKnown RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 STX5Q13190 355 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 IMPG1Q17R60 797 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 ESRP1Q6NXG1 681 aaKnown RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 PRR23BQ6ZRT6 265 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 HFE2Q6ZVN8 426 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 ILDR2Q71H61 639 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 PIGZQ86VD9 579 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 ZC3H7AQ8IWR0 971 aaKnown RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 CCDC138Q96M89 665 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms