RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 TECP42680 631 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 SUMO2P61956 95 aaKnown RBP6.47□□□□□ -1.37
RTF1-204ENST00000558117 CYP4F2P78329 520 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 MECOMQ03112 1051 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 CSTF1Q05048 431 aaKnown RBP6.47□□□□□ -1.37
RTF1-204ENST00000558117 TROAPQ12815 778 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 SLC10A2Q12908 348 aaPredicted RBP6.47□□□□□ -1.37
RTF1-204ENST00000558117 LPAL2Q16609 132 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 PTGISQ16647 500 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 DUSP6Q16828 381 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 ARL13BQ3SXY8 428 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 TMEM119Q4V9L6 283 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 SYCP2LQ5T4T6 812 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 L1TD1Q5T7N2 865 aaKnown RBP6.47□□□□□ -1.37
RTF1-204ENST00000558117 MTHFD1LQ6UB35 978 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 CRTC1Q6UUV9 634 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 TEX11Q8IYF3 940 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 OR2C3Q8N628 320 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 METTL25Q8N6Q8 603 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 TDRD5Q8NAT2 981 aaKnown RBP6.47□□□□□ -1.37
RTF1-204ENST00000558117 LINS1Q8NG48 757 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 CTHRC1Q96CG8 243 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 NECTIN4Q96NY8 510 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 THAP7Q9BT49 309 aaPredicted RBP6.47□□□□□ -1.37
RTF1-204ENST00000558117 SELENOOQ9BVL4 669 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 INO80BQ9C086 356 aaPredicted RBP6.47□□□□□ -1.37
RTF1-204ENST00000558117 HEYLQ9NQ87 328 aaPredicted RBP6.47□□□□□ -1.37
RTF1-204ENST00000558117 PDGFCQ9NRA1 345 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 SERGEFQ9UGK8 458 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 VPS51Q9UID3 782 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 MAN2B2Q9Y2E5 1009 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 ACACAQ13085 2346 aa6.47□□□□□ -1.37
RTF1-204ENST00000558117 MCM3APO60318 1980 aa6.46□□□□□ -1.37
RTF1-204ENST00000558117 LINC01548A6NM66 108 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 FGF18O76093 207 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 HSPA5P11021 654 aaKnown RBP6.46□□□□□ -1.38
RTF1-204ENST00000558117 HOXB8P17481 243 aaPredicted RBP6.46□□□□□ -1.38
RTF1-204ENST00000558117 FPR3P25089 353 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 ATICP31939 592 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 TMPOP42166 694 aaKnown RBP6.46□□□□□ -1.38
RTF1-204ENST00000558117 RIPPLY3P57055 190 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 PSG6Q00889 435 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 LMOD3Q0VAK6 560 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 TRIM71Q2Q1W2 868 aaKnown RBP6.46□□□□□ -1.38
RTF1-204ENST00000558117 FNDC1Q4ZHG4 1894 aaPredicted RBP6.46□□□□□ -1.38
RTF1-204ENST00000558117 USP49Q70CQ1 688 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 G2E3Q7L622 706 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 SRLQ86TD4 932 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 RAB11FIP4Q86YS3 637 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 TXLNBQ8N3L3 684 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 ZNF843Q8N446 348 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 SVIPQ8NHG7 77 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 POF1BQ8WVV4 589 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 VOPP1Q96AW1 172 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 DAZAP1Q96EP5 407 aaKnown RBP6.46□□□□□ -1.38
RTF1-204ENST00000558117 HIST1H2AAQ96QV6 131 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 CDCA3Q99618 268 aaPredicted RBP6.46□□□□□ -1.38
RTF1-204ENST00000558117 IFIH1Q9BYX4 1025 aaKnown RBP6.46□□□□□ -1.38
RTF1-204ENST00000558117 DNAJB11Q9UBS4 358 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 RIMKLBQ9ULI2 386 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 RIPK3Q9Y572 518 aa6.46□□□□□ -1.38
RTF1-204ENST00000558117 TICRRQ7Z2Z1 1910 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 FSD2A1L4K1 749 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 VWA5AO00534 786 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 CES2O00748 559 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 SPRY2O43597 315 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 NDST3O95803 873 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 CLEC9AQ6UXN8 241 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 TRIM72Q6ZMU5 477 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 KIAA0408Q6ZU52 694 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 BEND5Q7L4P6 421 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 SKAP1Q86WV1 359 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 SIRT6Q8N6T7 355 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 KIAA1191Q96A73 305 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 WDYHV1Q96HA8 205 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 ZC3H10Q96K80 434 aaKnown RBP6.45□□□□□ -1.38
RTF1-204ENST00000558117 TNIP3Q96KP6 325 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 FAM227BQ96M60 508 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 FBXO28Q9NVF7 368 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 CA14Q9ULX7 337 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 FRMD4BQ9Y2L6 1034 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 NEUROG3Q9Y4Z2 214 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 ADGRA3Q8IWK6 1321 aa6.45□□□□□ -1.38
RTF1-204ENST00000558117 MYH13Q9UKX3 1938 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 ZFHX3Q15911 3703 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 MMP3P08254 477 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 NHLRC4P0CG21 123 aaPredicted RBP6.44□□□□□ -1.38
RTF1-204ENST00000558117 MYL4P12829 197 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 PAX3P23760 479 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 GABRB3P28472 473 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 COPAP53621 1224 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 IRX6P78412 446 aaPredicted RBP6.44□□□□□ -1.38
RTF1-204ENST00000558117 HOXA4Q00056 320 aaPredicted RBP6.44□□□□□ -1.38
RTF1-204ENST00000558117 SLC35G1Q2M3R5 365 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 RNASE12Q5GAN4 147 aaKnown RBP6.44□□□□□ -1.38
RTF1-204ENST00000558117 STPG1Q5TH74 334 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 CCDC30Q5VVM6 783 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 IZUMO3Q5VZ72 239 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 RAP1GAP2Q684P5 730 aa6.44□□□□□ -1.38
RTF1-204ENST00000558117 DENND2CQ68D51 928 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms