RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 AP3B1O00203 1094 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 MUSKO15146 869 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 TP73O15350 636 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 PPFIA2O75334 1257 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 TMEM63AO94886 807 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 SUN1O94901 812 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 KAT7O95251 611 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 IGSF6O95976 241 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 ASGR2P07307 311 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 SERPINF2P08697 491 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 CD86P42081 329 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 STK19P49842 368 aaPredicted RBP17.1■□□□□ 0.33
SNX1-203ENST00000558040 ARL4CP56559 192 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 SNRPD1P62314 119 aaKnown RBP17.1■□□□□ 0.33
SNX1-203ENST00000558040 TDGQ13569 410 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 ACCSLQ4AC99 568 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 SYCP2LQ5T4T6 812 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 KCTD11Q693B1 232 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 NAPEPLDQ6IQ20 393 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 C22orf39Q6P5X5 142 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 ADHFE1Q8IWW8 467 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 PDIK1LQ8N165 341 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 PCDH20Q8N6Y1 951 aaKnown RBP17.1■□□□□ 0.33
SNX1-203ENST00000558040 KDM1BQ8NB78 822 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 SPATA22Q8NHS9 363 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 ARRDC2Q8TBH0 407 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 OXNAD1Q96HP4 312 aaPredicted RBP17.1■□□□□ 0.33
SNX1-203ENST00000558040 GDAP1L1Q96MZ0 367 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 RBM15Q96T37 977 aaKnown RBP eCLIP17.1■□□□□ 0.33
SNX1-203ENST00000558040 P2RY13Q9BPV8 354 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 GORASP1Q9BQQ3 440 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 MLPHQ9BV36 600 aaPredicted RBP17.1■□□□□ 0.33
SNX1-203ENST00000558040 FSD1LQ9BXM9 530 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 PHACTR1Q9C0D0 580 aa17.1■□□□□ 0.33
SNX1-203ENST00000558040 XAB2Q9HCS7 855 aaKnown RBP17.1■□□□□ 0.33
SNX1-203ENST00000558040 TICRRQ7Z2Z1 1910 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 TCRBV7S3A2A0A539 114 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 SPECC1L-ADORA2AF8WAN1 911 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 GOLGA8MH3BSY2 632 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 INSIG1O15503 277 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 SMAD6O43541 496 aaKnown RBP17.09■□□□□ 0.33
SNX1-203ENST00000558040 ATP9BO43861 1147 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 GSRP00390 522 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 SRFP11831 508 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 GLULP15104 373 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 CR2P20023 1033 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 CA4P22748 312 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 CTHP32929 405 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 SOX9P48436 509 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 CSNK1DP48730 415 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 SCNN1BP51168 640 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 AP1S1P61966 158 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 SKOR1P84550 965 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 NIPAL4Q0D2K0 466 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 SLMAPQ14BN4 828 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 HIF1AQ16665 826 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 CENPUQ71F23 418 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 PRPF39Q86UA1 669 aaKnown RBP17.09■□□□□ 0.33
SNX1-203ENST00000558040 IPMKQ8NFU5 416 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 AENQ8WTP8 325 aaKnown RBP17.09■□□□□ 0.33
SNX1-203ENST00000558040 CYB5D2Q8WUJ1 264 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 HNRNPLLQ8WVV9 542 aaKnown RBP17.09■□□□□ 0.33
SNX1-203ENST00000558040 EXOC2Q96KP1 924 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 PRDM6Q9NQX0 595 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 SLC2A4RGQ9NR83 387 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 UBP1Q9NZI7 540 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 PIAS3Q9Y6X2 628 aa17.09■□□□□ 0.33
SNX1-203ENST00000558040 PRRT4C9JH25 899 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 EIF3HO15372 352 aaKnown RBP eCLIP17.08■□□□□ 0.32
SNX1-203ENST00000558040 PMPCBO75439 489 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 MT-CYBP00156 380 aaPredicted RBP17.08■□□□□ 0.32
SNX1-203ENST00000558040 MLNP12872 115 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 H2AFXP16104 143 aaPredicted RBP17.08■□□□□ 0.32
SNX1-203ENST00000558040 RECQLP46063 649 aaPredicted RBP17.08■□□□□ 0.32
SNX1-203ENST00000558040 RGRP47804 291 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 DLG2Q15700 870 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 DNAJC21Q5F1R6 531 aaKnown RBP17.08■□□□□ 0.32
SNX1-203ENST00000558040 SRLQ86TD4 932 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 CCDC25Q86WR0 208 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 PLPP6Q8IY26 295 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 OR2AP1Q8NGE2 309 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 SORCS1Q8WY21 1168 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 CAVIN3Q969G5 261 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 TADA1Q96BN2 335 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 CHFRQ96EP1 664 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 MRGPRX3Q96LB0 322 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 SERPINB12Q96P63 405 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 TBL1YQ9BQ87 522 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 TM6SF2Q9BZW4 377 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 NOD2Q9HC29 1040 aa17.08■□□□□ 0.32
SNX1-203ENST00000558040 MYO18AQ92614 2054 aaKnown RBP17.08■□□□□ 0.32
SNX1-203ENST00000558040 REV3LO60673 3130 aa17.07■□□□□ 0.32
SNX1-203ENST00000558040 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.07■□□□□ 0.32
SNX1-203ENST00000558040 NPC1O15118 1278 aa17.07■□□□□ 0.32
SNX1-203ENST00000558040 MMP2P08253 660 aa17.07■□□□□ 0.32
SNX1-203ENST00000558040 FAM153BP0C7A2 387 aa17.07■□□□□ 0.32
SNX1-203ENST00000558040 TNFRSF4P43489 277 aa17.07■□□□□ 0.32
SNX1-203ENST00000558040 GALK1P51570 392 aa17.07■□□□□ 0.32
SNX1-203ENST00000558040 WNT3AP56704 352 aa17.07■□□□□ 0.32
SNX1-203ENST00000558040 RAD51Q06609 339 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms