RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 KRIT1O00522 736 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 SPOPO43791 374 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 PALMO75781 387 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 CD48P09326 243 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 KDELR1P24390 212 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 IL4RP24394 825 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 CD27P26842 260 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 NUDT1P36639 197 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 NEK3P51956 506 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 METAP1P53582 386 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 GSDMDP57764 484 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 MMRN1Q13201 1228 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 GSE1Q14687 1217 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 GRM3Q14832 879 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 CYTH1Q15438 398 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 RSPO4Q2I0M5 234 aaPredicted RBP12.68□□□□□ -0.38
SLIRP-209ENST00000557342 ATP13A4Q4VNC1 1196 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 ANKRD20A8PQ5CZ79 823 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 PIP5KL1Q5T9C9 394 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 TCEAL6Q6IPX3 200 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 NEK5Q6P3R8 708 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 PRPF39Q86UA1 669 aaKnown RBP12.68□□□□□ -0.38
SLIRP-209ENST00000557342 VSIG1Q86XK7 387 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 CPNE8Q86YQ8 564 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 RHOT1Q8IXI2 618 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 ZCCHC9Q8N567 271 aaKnown RBP12.68□□□□□ -0.38
SLIRP-209ENST00000557342 NSMCE1Q8WV22 266 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 TCEAL3Q969E4 200 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 ARRDC3Q96B67 414 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 FAF2Q96CS3 445 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 ZNF599Q96NL3 588 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 CINPQ9BW66 212 aaPredicted RBP12.68□□□□□ -0.38
SLIRP-209ENST00000557342 CPEB1Q9BZB8 566 aaKnown RBP12.68□□□□□ -0.38
SLIRP-209ENST00000557342 ZDHHC5Q9C0B5 715 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 CAPN10Q9HC96 672 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 PREBQ9HCU5 417 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 ETNK2Q9NVF9 386 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 DDX56Q9NY93 547 aaKnown RBP12.68□□□□□ -0.38
SLIRP-209ENST00000557342 MFHAS1Q9Y4C4 1052 aa12.68□□□□□ -0.38
SLIRP-209ENST00000557342 A0A1W2PPC4 97 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 LRRD1A4D1F6 860 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 PLK4O00444 970 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 IGHV4-34P06331 123 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 ENGP17813 658 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 COMTP21964 271 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 ID4P47928 161 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 RENBPP51606 427 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 AFF3P51826 1226 aaKnown RBP12.67□□□□□ -0.38
SLIRP-209ENST00000557342 ATXN3P54252 364 aaPredicted RBP12.67□□□□□ -0.38
SLIRP-209ENST00000557342 PUM1Q14671 1186 aaKnown RBP eCLIP12.67□□□□□ -0.385e-7■■■□□ 19
SLIRP-209ENST00000557342 PAFAH1B3Q15102 231 aaKnown RBP12.67□□□□□ -0.38
SLIRP-209ENST00000557342 TEAD4Q15561 434 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 ZNF805Q5CZA5 627 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 ATXN7L2Q5T6C5 722 aaPredicted RBP12.67□□□□□ -0.38
SLIRP-209ENST00000557342 FBXL19Q6PCT2 694 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 GDPD4Q6W3E5 623 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 RAD9BQ6WBX8 426 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 TRIM69Q86WT6 500 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 BBS5Q8N3I7 341 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 ATPAF2Q8N5M1 289 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 OR6K2Q8NGY2 324 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 RAB7BQ96AH8 199 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 RTKNQ9BST9 563 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 MAK16Q9BXY0 300 aaKnown RBP12.67□□□□□ -0.38
SLIRP-209ENST00000557342 TMEM9BQ9NQ34 198 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 KLHL11Q9NVR0 708 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 LHX3Q9UBR4 397 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 SEPT3Q9UH03 358 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 TMEM131Q92545 1883 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 TRPM6Q9BX84 2022 aa12.67□□□□□ -0.38
SLIRP-209ENST00000557342 BTNL10A8MVZ5 291 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 C10orf142B7Z368 130 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 ARHGAP33O14559 1287 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 SLC30A4O14863 429 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 LATO43561 262 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 PSTPIP1O43586 416 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 GDF9O60383 454 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 BUB1BO60566 1050 aaPredicted RBP12.66□□□□□ -0.38
SLIRP-209ENST00000557342 ADRB3P13945 408 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 HSPA9P38646 679 aaKnown RBP12.66□□□□□ -0.38
SLIRP-209ENST00000557342 GRIA4P48058 902 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 CSNK1DP48730 415 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 VAV2P52735 878 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 NSUN2Q08J23 767 aaKnown RBP eCLIP12.66□□□□□ -0.38
SLIRP-209ENST00000557342 LBRQ14739 615 aaKnown RBP12.66□□□□□ -0.38
SLIRP-209ENST00000557342 STPG1Q5TH74 334 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 NCBP2-AS2Q69YL0 99 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 TIGD7Q6NT04 549 aaPredicted RBP12.66□□□□□ -0.38
SLIRP-209ENST00000557342 C11orf63Q6NUN7 778 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 IL27RAQ6UWB1 636 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 ARHGAP36Q6ZRI8 547 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 KIAA1328Q86T90 577 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 ZSCAN30Q86W11 494 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 TMEM139Q8IV31 216 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 NETO2Q8NC67 525 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 PCDH19Q8TAB3 1148 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 C1orf216Q8TAB5 229 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.66□□□□□ -0.38
SLIRP-209ENST00000557342 HCAR2Q8TDS4 363 aa12.66□□□□□ -0.38
SLIRP-209ENST00000557342 RAPGEF5Q92565 580 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms